mRNA_P-fluviatile_contig1.512.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.512.1
Unique NamemRNA_P-fluviatile_contig1.512.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5641693..5642295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.775982-UTR-P-fluviatile_contig1:5641692..56418541622815270.775982-UTR-P-fluviatile_contig1:5641692..5641854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5641693..5641854 +
1693561323.14842-UTR-P-fluviatile_contig1:5641692..56418541693561323.14842-UTR-P-fluviatile_contig1:5641692..5641854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5641693..5641854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.786225-CDS-P-fluviatile_contig1:5641854..56422951622815270.786225-CDS-P-fluviatile_contig1:5641854..5642295Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5641855..5642295 +
1693561323.1563396-CDS-P-fluviatile_contig1:5641854..56422951693561323.1563396-CDS-P-fluviatile_contig1:5641854..5642295Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5641855..5642295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.512.1prot_P-fluviatile_contig1.512.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5641855..5642295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.512.1

>prot_P-fluviatile_contig1.512.1 ID=prot_P-fluviatile_contig1.512.1|Name=mRNA_P-fluviatile_contig1.512.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=147bp
MPSNSVEECALRLASFKQEKSESVSNYALRFKAVQQRFEASVERGTPGRD
PWAALSVILWQNGLAPAIQCLQLAEKPVTSFREAVDRARRHEAASLVGGA
AVSAMSFTHVPNRAAAAASQFPPRQANTSRRPHTSAGHRRGPSHRGK
back to top

mRNA from alignment at P-fluviatile_contig1:5641693..5642295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.512.1 ID=mRNA_P-fluviatile_contig1.512.1|Name=mRNA_P-fluviatile_contig1.512.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=603bp|location=Sequence derived from alignment at P-fluviatile_contig1:5641693..5642295+ (Porterinema fluviatile SAG_2381)
CTCTGCTGTCCGCAGAGAGACGAGGAGTCATAACCCTCCAACGACCTTCT
AGCGTGTACCCATCCTCATTGGCGTCGACGGCAGAAAACCACCGAAAAAT
CCGGTTCGTTCACCCCTCCCTCCACCTGGAAGGAACTGTCCAACGCTGTC
ATCGACCTCCTCATGCCTAGCAACAGTGTAGAGGAGTGTGCTCTGCGTCT
TGCCTCGTTTAAGCAAGAAAAGAGCGAGTCTGTGAGCAACTACGCTCTCC
GCTTCAAAGCTGTCCAACAGCGTTTCGAAGCATCTGTCGAGCGCGGGACC
CCGGGACGTGACCCGTGGGCCGCGCTGTCTGTCATTCTGTGGCAGAACGG
TCTTGCCCCCGCCATTCAATGTCTGCAACTGGCAGAGAAGCCGGTCACCT
CGTTCCGCGAGGCTGTCGACCGTGCTCGGCGCCACGAGGCCGCAAGCCTT
GTCGGCGGCGCCGCCGTCAGCGCCATGTCATTTACACACGTACCCAACCG
TGCTGCCGCTGCCGCCTCTCAGTTCCCGCCCCGCCAGGCCAACACCTCGC
GCCGCCCTCACACGTCCGCGGGACACCGCCGCGGCCCTTCGCACCGCGGC
AAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5641693..5642295+

>mRNA_P-fluviatile_contig1.512.1 ID=mRNA_P-fluviatile_contig1.512.1|Name=mRNA_P-fluviatile_contig1.512.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=882bp|location=Sequence derived from alignment at P-fluviatile_contig1:5641693..5642295+ (Porterinema fluviatile SAG_2381)
ATGCCTAGCAACAGTGTAGAGGAGTGTGCTCTGCGTCTTGCCTCGTTTAA
GCAAGAAAAGAGCGAGTCTGTGAGCAACTACGCTCTCCGCTTCAAAGCTG
TCCAACAGCGTTTCGAAGCATCTGTCGAGCGCGGGACCCCGGGACGTGAC
CCGTGGGCCGCGCTGTCTGTCATTCTGTGGCAGAACGGTCTTGCCCCCGC
CATTCAATGTCTGCAACTGGCAGAGAAGCCGGTCACCTCGTTCCGCGAGG
CTGTCGACCGTGCTCGGCGCCACGAGGCCGCAAGCCTTGTCGGCGGCGCC
GCCGTCAGCGCCATGTCATTTACACACGTACCCAACCGTGCTGCCGCTGC
CGCCTCTCAGTTCCCGCCCCGCCAGGCCAACACCTCGCGCCGCCCTCACA
CGTCCGCGGGACACCGCCGCGGCCCTTCGCACCGCGGCAAGATGCCTAGC
AACAGTGTAGAGGAGTGTGCTCTGCGTCTTGCCTCGTTTAAGCAAGAAAA
GAGCGAGTCTGTGAGCAACTACGCTCTCCGCTTCAAAGCTGTCCAACAGC
GTTTCGAAGCATCTGTCGAGCGCGGGACCCCGGGACGTGACCCGTGGGCC
GCGCTGTCTGTCATTCTGTGGCAGAACGGTCTTGCCCCCGCCATTCAATG
TCTGCAACTGGCAGAGAAGCCGGTCACCTCGTTCCGCGAGGCTGTCGACC
GTGCTCGGCGCCACGAGGCCGCAAGCCTTGTCGGCGGCGCCGCCGTCAGC
GCCATGTCATTTACACACGTACCCAACCGTGCTGCCGCTGCCGCCTCTCA
GTTCCCGCCCCGCCAGGCCAACACCTCGCGCCGCCCTCACACGTCCGCGG
GACACCGCCGCGGCCCTTCGCACCGCGGCAAG
back to top