mRNA_P-fluviatile_contig1.500.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.500.1
Unique NamemRNA_P-fluviatile_contig1.500.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5523111..5523594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.7114758-CDS-P-fluviatile_contig1:5523110..55235931622815270.7114758-CDS-P-fluviatile_contig1:5523110..5523593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5523111..5523593 +
1693561323.1298363-CDS-P-fluviatile_contig1:5523110..55235931693561323.1298363-CDS-P-fluviatile_contig1:5523110..5523593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5523111..5523593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.500.1prot_P-fluviatile_contig1.500.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5523111..5523593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.500.1

>prot_P-fluviatile_contig1.500.1 ID=prot_P-fluviatile_contig1.500.1|Name=mRNA_P-fluviatile_contig1.500.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=161bp
PRRRDERVGSEIRLCGPAGSWVCVVFTVLNGTCFRHSTPTFPSQPFVKRW
ARKWRDFAGWHLLNPKDKIWKWSRAHSSTQCSPCSSLLAMETWRWQSIAV
SFYRRELALCRHGRKDIQRLDMSASFSHACVPRFLSSSPPPDGSGPRPCS
ILRPECIASFP
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mRNA from alignment at P-fluviatile_contig1:5523111..5523594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.500.1 ID=mRNA_P-fluviatile_contig1.500.1|Name=mRNA_P-fluviatile_contig1.500.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=484bp|location=Sequence derived from alignment at P-fluviatile_contig1:5523111..5523594+ (Porterinema fluviatile SAG_2381)
CCTCGTCGTCGTGATGAGCGCGTGGGCTCCGAAATTCGGCTCTGCGGGCC
AGCCGGCTCTTGGGTGTGTGTGGTTTTCACCGTCCTTAACGGGACGTGTT
TCAGACACAGTACACCTACATTTCCTTCACAGCCGTTCGTAAAGAGATGG
GCTCGAAAATGGCGGGACTTCGCAGGCTGGCATCTTTTAAACCCTAAAGA
TAAAATATGGAAGTGGTCGAGAGCTCACAGCAGCACTCAGTGCTCGCCTT
GCAGCAGCCTATTGGCAATGGAAACTTGGAGGTGGCAATCCATTGCCGTG
AGCTTCTACCGCAGGGAACTTGCTCTGTGCCGGCACGGCCGCAAGGATAT
TCAACGCCTTGATATGTCCGCTTCATTCAGTCATGCATGTGTACCCCGCT
TCCTCTCCTCCTCTCCCCCTCCGGATGGGAGCGGGCCTCGTCCTTGTTCA
ATCTTGCGCCCGGAGTGCATTGCTTCGTTTCCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5523111..5523594+

>mRNA_P-fluviatile_contig1.500.1 ID=mRNA_P-fluviatile_contig1.500.1|Name=mRNA_P-fluviatile_contig1.500.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=966bp|location=Sequence derived from alignment at P-fluviatile_contig1:5523111..5523594+ (Porterinema fluviatile SAG_2381)
CCTCGTCGTCGTGATGAGCGCGTGGGCTCCGAAATTCGGCTCTGCGGGCC
AGCCGGCTCTTGGGTGTGTGTGGTTTTCACCGTCCTTAACGGGACGTGTT
TCAGACACAGTACACCTACATTTCCTTCACAGCCGTTCGTAAAGAGATGG
GCTCGAAAATGGCGGGACTTCGCAGGCTGGCATCTTTTAAACCCTAAAGA
TAAAATATGGAAGTGGTCGAGAGCTCACAGCAGCACTCAGTGCTCGCCTT
GCAGCAGCCTATTGGCAATGGAAACTTGGAGGTGGCAATCCATTGCCGTG
AGCTTCTACCGCAGGGAACTTGCTCTGTGCCGGCACGGCCGCAAGGATAT
TCAACGCCTTGATATGTCCGCTTCATTCAGTCATGCATGTGTACCCCGCT
TCCTCTCCTCCTCTCCCCCTCCGGATGGGAGCGGGCCTCGTCCTTGTTCA
ATCTTGCGCCCGGAGTGCATTGCTTCGTTTCCACCTCGTCGTCGTGATGA
GCGCGTGGGCTCCGAAATTCGGCTCTGCGGGCCAGCCGGCTCTTGGGTGT
GTGTGGTTTTCACCGTCCTTAACGGGACGTGTTTCAGACACAGTACACCT
ACATTTCCTTCACAGCCGTTCGTAAAGAGATGGGCTCGAAAATGGCGGGA
CTTCGCAGGCTGGCATCTTTTAAACCCTAAAGATAAAATATGGAAGTGGT
CGAGAGCTCACAGCAGCACTCAGTGCTCGCCTTGCAGCAGCCTATTGGCA
ATGGAAACTTGGAGGTGGCAATCCATTGCCGTGAGCTTCTACCGCAGGGA
ACTTGCTCTGTGCCGGCACGGCCGCAAGGATATTCAACGCCTTGATATGT
CCGCTTCATTCAGTCATGCATGTGTACCCCGCTTCCTCTCCTCCTCTCCC
CCTCCGGATGGGAGCGGGCCTCGTCCTTGTTCAATCTTGCGCCCGGAGTG
CATTGCTTCGTTTCCA
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