mRNA_P-fluviatile_contig11.1069.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1069.1
Unique NamemRNA_P-fluviatile_contig11.1069.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1069.1 vs. uniprot
Match: D7G4N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.000e-6
Identity = 40/91 (43.96%), Postives = 45/91 (49.45%), Query Frame = 2 
Query:  656 RANLSSHRIAMDAALRTVQWEGARQGIVREEKE------------------------------------ITSLEQRRQRAKAWAKSSSRRA 820
            RA +S H +AMDAA+R V+  GAR GIVREEKE                                    +TSLEQRRQRAKAWAKS  R A
Sbjct:   27 RAAMSPHGVAMDAAIRIVEERGARLGIVREEKEGDGXXXXXXXXXXXXXXNSSERAREAAYANQIAAPAMTSLEQRRQRAKAWAKSRRRSA 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4N6_ECTSI5.000e-643.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:1018779..1020495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size970
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1069.1prot_P-fluviatile_contig11.1069.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 1018779..1020224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.4309883-CDS-P-fluviatile_contig11:1018778..10189411622815425.4309883-CDS-P-fluviatile_contig11:1018778..1018941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1018779..1018941 -
1693561808.3548777-CDS-P-fluviatile_contig11:1018778..10189411693561808.3548777-CDS-P-fluviatile_contig11:1018778..1018941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1018779..1018941 -
1622815425.443339-CDS-P-fluviatile_contig11:1019688..10202241622815425.443339-CDS-P-fluviatile_contig11:1019688..1020224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1019689..1020224 -
1693561808.3642828-CDS-P-fluviatile_contig11:1019688..10202241693561808.3642828-CDS-P-fluviatile_contig11:1019688..1020224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1019689..1020224 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.4893358-UTR-P-fluviatile_contig11:1020224..10204951622815425.4893358-UTR-P-fluviatile_contig11:1020224..1020495Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1020225..1020495 -
1693561808.3739047-UTR-P-fluviatile_contig11:1020224..10204951693561808.3739047-UTR-P-fluviatile_contig11:1020224..1020495Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1020225..1020495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1069.1

>prot_P-fluviatile_contig11.1069.1 ID=prot_P-fluviatile_contig11.1069.1|Name=mRNA_P-fluviatile_contig11.1069.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=233bp
MFSSGSECSPRRPPRPPTSPTGKIFERSGSVKPAMVSTFGTRAEGDEIAE
KRETDIGGLRLLLRSNMSTALLESEAKRGSGKVRVQGWSVVSARDFVPPR
EQISMCDSDTTSADPSANSTLKDWGSTPRANLSSHRIAMDAALRTVQWEG
ARQGIVREEKEITSLEQRRQRAKAWAKSSSRRARDTAHQIRTGAMPDLDK
SGMTVPRSRAVVQLQECEIKKKASTRDEIKEEE
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mRNA from alignment at P-fluviatile_contig11:1018779..1020495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1069.1 ID=mRNA_P-fluviatile_contig11.1069.1|Name=mRNA_P-fluviatile_contig11.1069.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1717bp|location=Sequence derived from alignment at P-fluviatile_contig11:1018779..1020495- (Porterinema fluviatile SAG_2381)
GGCCCCCCTTCTCTGTCGGCAACCACAACACAGGCGACACTAGGGATGTG
AACTGCATCTGTGAATTTGTTGTGCCCAGTGGCGGAACGAAAGCGATTTT
CTTGAATGCATCAGGCCTGGTCCGGGGAACGGTGCTGAAACAAACAGCGC
ATCCATCCCTTTAAAAAAAGGGAATTATTTTATTCCTCCGACGGACCACC
AAAATAGTTCACGACGACAGACCACGACGACACGCGCAGACGTCTTCGAG
TGTATCACGGACCGAAAGAAAATGTTTTCTAGTGGGTCAGAATGCTCGCC
TCGTCGTCCACCTCGTCCACCCACGTCGCCGACGGGCAAAATCTTCGAGA
GATCAGGGAGCGTGAAACCTGCGATGGTGTCAACCTTCGGAACGCGTGCT
GAAGGAGATGAAATTGCTGAGAAGAGGGAGACGGACATCGGGGGGTTGAG
GTTACTCCTTCGTTCGAACATGTCAACGGCGCTGCTGGAGAGCGAGGCGA
AACGCGGTAGCGGGAAGGTCAGGGTCCAGGGTTGGAGTGTTGTTTCTGCA
AGAGATTTCGTCCCGCCGAGAGAGCAGATCAGCATGTGTGACAGCGACAC
GACCTCGGCCGACCCCAGCGCCAACAGCACCTTGAAGGATTGGGGTTCTA
CTCCGAGAGCGAACTTGTCTAGCCACCGGATCGCCATGGACGCGGCGTTA
CGGACGGTGCAATGGGAAGGCGCCAGACAGGGGATCGTGAGGGAGGAGAA
GGAGATAACTTCGCTAGAGCAGCGGCGACAGCGCGCAAAGGCTTGGGCGA
AGTCCAGGTTTGTCTCCGGGGAATGCATTCTGTCCGCTGTCGTCGCGTGT
GAGCGCGAGAAAAAAGGAGTTATTACTACTCCGGAGTATAAACTACTCGG
AGTATGTATTAGAAAGTCTTTAGAATATAAATGTGTCCTTTTGTTTAAGT
TGTAGCTCAGCTATGGGCAACGGGCTTGTTGGGTAAGGGCTTCCCTTAGT
TCTGTTGCTCCATCCAGGGGCGAAGCTAAGGTACATACCCAGGCGCATCC
AATCGAAGACATATCCTCACCCATCCGCTACCTTTTCTTGAACCGATTTG
GTCACGCAGTGGGAGCGCGTAAGCTACAGTGATGTGTGGCATGGTCCGCC
GGCCTCAAGGGTGAAATGACCCGCCCCCACTTTTAATTTTTTTTGCCCAT
TATTTGATTGGAATGTATCTGGAATGTATCTATAATTGGCCAAGCACTCG
CCCTTTCGCGCTCCCAGAAACACAGATAACGTTTTCACGAAGCAGCCATT
AGGAAGCAAGTGTCGATCGCGAATGTAAGTGCATTATCTGCTGCTCTCGC
CGCCGCTCCAGCTGATTCCCCGCCTCGCGCTTGGCTGTTGTCTTTCCCGT
CGACCTCGAACGGCTGCGGCCGTGTGTTCTCGCCCGCTCTTTTTCCTTTT
CTTAACGACGAATCACGGGGGTTCTTGAGATAGAGTATCCTTTTGTTTTG
TAATGACACGACATGTTTGCCTTCCACGACCCCCGACCCCACTCCCTGCT
TCAGTTCTCGCAGAGCCAGAGACACGGCGCACCAGATTCGAACGGGGGCG
ATGCCCGATCTCGACAAAAGCGGCATGACAGTGCCGCGGTCTAGAGCGGT
GGTGCAGTTGCAGGAGTGTGAAATAAAAAAGAAAGCCAGCACCCGGGACG
AGATAAAGGAGGAGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:1018779..1020495-

>mRNA_P-fluviatile_contig11.1069.1 ID=mRNA_P-fluviatile_contig11.1069.1|Name=mRNA_P-fluviatile_contig11.1069.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1398bp|location=Sequence derived from alignment at P-fluviatile_contig11:1018779..1020495- (Porterinema fluviatile SAG_2381)
ATGTTTTCTAGTGGGTCAGAATGCTCGCCTCGTCGTCCACCTCGTCCACC
CACGTCGCCGACGGGCAAAATCTTCGAGAGATCAGGGAGCGTGAAACCTG
CGATGGTGTCAACCTTCGGAACGCGTGCTGAAGGAGATGAAATTGCTGAG
AAGAGGGAGACGGACATCGGGGGGTTGAGGTTACTCCTTCGTTCGAACAT
GTCAACGGCGCTGCTGGAGAGCGAGGCGAAACGCGGTAGCGGGAAGGTCA
GGGTCCAGGGTTGGAGTGTTGTTTCTGCAAGAGATTTCGTCCCGCCGAGA
GAGCAGATCAGCATGTGTGACAGCGACACGACCTCGGCCGACCCCAGCGC
CAACAGCACCTTGAAGGATTGGGGTTCTACTCCGAGAGCGAACTTGTCTA
GCCACCGGATCGCCATGGACGCGGCGTTACGGACGGTGCAATGGGAAGGC
GCCAGACAGGGGATCGTGAGGGAGGAGAAGGAGATAACTTCGCTAGAGCA
GCGGCGACAGCGCGCAAAGGCTTGGGCGAAGTCCAGATGTTTTCTAGTGG
GTCAGAATGCTCGCCTCGTCGTCCACCTCGTCCACCCACGTCGCCGACGG
GCAAAATCTTCGAGAGATCAGGGAGCGTGAAACCTGCGATGGTGTCAACC
TTCGGAACGCGTGCTGAAGGAGATGAAATTGCTGAGAAGAGGGAGACGGA
CATCGGGGGGTTGAGGTTACTCCTTCGTTCGAACATGTCAACGGCGCTGC
TGGAGAGCGAGGCGAAACGCGGTAGCGGGAAGGTCAGGGTCCAGGGTTGG
AGTGTTGTTTCTGCAAGAGATTTCGTCCCGCCGAGAGAGCAGATCAGCAT
GTGTGACAGCGACACGACCTCGGCCGACCCCAGCGCCAACAGCACCTTGA
AGGATTGGGGTTCTACTCCGAGAGCGAACTTGTCTAGCCACCGGATCGCC
ATGGACGCGGCGTTACGGACGGTGCAATGGGAAGGCGCCAGACAGGGGAT
CGTGAGGGAGGAGAAGGAGATAACTTCGCTAGAGCAGCGGCGACAGCGCG
CAAAGGCTTGGGCGAAGTCCAGTTCTCGCAGAGCCAGAGACACGGCGCAC
CAGATTCGAACGGGGGCGATGCCCGATCTCGACAAAAGCGGCATGACAGT
GCCGCGGTCTAGAGCGGTGGTGCAGTTGCAGGAGTGTGAAATAAAAAAGA
AAGCCAGCACCCGGGACGAGATAAAGGAGGAGGAGTTCTCGCAGAGCCAG
AGACACGGCGCACCAGATTCGAACGGGGGCGATGCCCGATCTCGACAAAA
GCGGCATGACAGTGCCGCGGTCTAGAGCGGTGGTGCAGTTGCAGGAGTGT
GAAATAAAAAAGAAAGCCAGCACCCGGGACGAGATAAAGGAGGAGGAG
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