mRNA_P-fluviatile_contig103.948.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig103.948.1
Unique NamemRNA_P-fluviatile_contig103.948.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig103.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig103contigP-fluviatile_contig103:13395..13773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.2573762-CDS-P-fluviatile_contig103:13394..134851622815422.2573762-CDS-P-fluviatile_contig103:13394..13485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig103 13395..13485 +
1693561798.553983-CDS-P-fluviatile_contig103:13394..134851693561798.553983-CDS-P-fluviatile_contig103:13394..13485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig103 13395..13485 +
1622815422.269284-CDS-P-fluviatile_contig103:13654..137731622815422.269284-CDS-P-fluviatile_contig103:13654..13773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig103 13655..13773 +
1693561798.5633698-CDS-P-fluviatile_contig103:13654..137731693561798.5633698-CDS-P-fluviatile_contig103:13654..13773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig103 13655..13773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig103.948.1prot_P-fluviatile_contig103.948.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig103 13395..13773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig103.948.1

>prot_P-fluviatile_contig103.948.1 ID=prot_P-fluviatile_contig103.948.1|Name=mRNA_P-fluviatile_contig103.948.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=70bp
RANARTETSISSYVCCCEDHVTPFPPHGSCTEHNTRKHQESTSQNHMKRL
FISTTYHEATMAIQAITHAK
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mRNA from alignment at P-fluviatile_contig103:13395..13773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig103.948.1 ID=mRNA_P-fluviatile_contig103.948.1|Name=mRNA_P-fluviatile_contig103.948.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=379bp|location=Sequence derived from alignment at P-fluviatile_contig103:13395..13773+ (Porterinema fluviatile SAG_2381)
CGCGCAAACGCCAGAACCGAAACATCAATATCTAGTTATGTGTGCTGCTG
CGAGGACCATGTAACACCATTTCCCCCCCATGGTTCTTGCAGCAGAACAC
AACACCAGAGGCTAAGCCCTGGTCGTATTGAACTCAGCCTAACTGGAAAC
ACGTAATTCCGTAGGCCCTGGCTGATTGACCGACCTTCGTCTTGCAACGA
TTGCGGTGGCGGGAACTGCGAGAACCATGTAACACCATTTCCCCCCCATG
GTTCTTGCAGCAGAACACAACACCAGAAAGCACCAAGAATCCACAAGTCA
GAACCACATGAAAAGGTTGTTCATCTCTACCACGTATCATGAAGCAACCA
TGGCGATTCAAGCAATAACACACGCAAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig103:13395..13773+

>mRNA_P-fluviatile_contig103.948.1 ID=mRNA_P-fluviatile_contig103.948.1|Name=mRNA_P-fluviatile_contig103.948.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=420bp|location=Sequence derived from alignment at P-fluviatile_contig103:13395..13773+ (Porterinema fluviatile SAG_2381)
CGCGCAAACGCCAGAACCGAAACATCAATATCTAGTTATGTGTGCTGCTG
CGAGGACCATGTAACACCATTTCCCCCCCATGGTTCTTGCACGCGCAAAC
GCCAGAACCGAAACATCAATATCTAGTTATGTGTGCTGCTGCGAGGACCA
TGTAACACCATTTCCCCCCCATGGTTCTTGCACAGAACACAACACCAGAA
AGCACCAAGAATCCACAAGTCAGAACCACATGAAAAGGTTGTTCATCTCT
ACCACGTATCATGAAGCAACCATGGCGATTCAAGCAATAACACACGCAAA
ACAGAACACAACACCAGAAAGCACCAAGAATCCACAAGTCAGAACCACAT
GAAAAGGTTGTTCATCTCTACCACGTATCATGAAGCAACCATGGCGATTC
AAGCAATAACACACGCAAAA
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