mRNA_P-fluviatile_contig102.947.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig102.947.1
Unique NamemRNA_P-fluviatile_contig102.947.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 1.010e-95
Identity = 209/356 (58.71%), Postives = 230/356 (64.61%), Query Frame = 1 
Query:    1 DGDVDAADGGATGVAPMEVGDDSDGFGDFGAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEKVAKQARKRKAAGTARVDSTQLGRWLTEPVLPCLDKFIENNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRVFKDIFLPQSNIDLLSLSGSDDKNLWGEEKNRLDTMKRLRKHYDLDHVFDPLDIDVELGRTRVRLEGGIIQKVKSFRSGQYILEDGTMIGQWELLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGMLLDVDGGMERAAATGDKVDPVSNLPLDDLEVLKNKTERVRQLSLEIFTKASVQDLLP 1068
            DG+VDAADGG TGV PM+VGDDSDGFGD G                       XXXXXXXXXXXXXX  KVAKQ RK+KAAG  RV   +L RWLTEPVLPCLDKFI  NRKLA +R K+HEGSA  TPGKPAGVG + DLAGPLSLLSKSKEGGFRVFKD F P++NI+LLSLS  D KNL GEEKNR    KRLR HYDLD+VFDP+     +G                                         KG T  ++         A HT TLSQIVPYISGGD TM+DGMLLDVDGG+E A AT DK+D  S L L +L+ +K KTERVRQLSLEIF KASVQDLLP
Sbjct:  537 DGEVDAADGGDTGVDPMKVGDDSDGFGDSGX----------------------XXXXXXXXXXXXXXXAKVAKQGRKQKAAGQKRVTGPKLARWLTEPVLPCLDKFIRTNRKLAKQRGKDHEGSAGHTPGKPAGVGYITDLAGPLSLLSKSKEGGFRVFKDTFFPRANINLLSLSEDDVKNLRGEEKNRWSKTKRLRAHYDLDYVFDPVGHRCGVGAD---------------------------------------KGSTRRREDPE-----GATHTTTLSQIVPYISGGDKTMSDGMLLDVDGGIEGAVATVDKIDSKSKLSLVNLQAIKTKTERVRQLSLEIFAKASVQDLLP 826
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 184 bits (466), Expect = 2.140e-51
Identity = 109/285 (38.25%), Postives = 161/285 (56.49%), Query Frame = 1 
Query:  217 KQARKRKAAGTARVDSTQLGRWLTEPVLPCLDKFIENNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRVFKDIFLPQSNIDLLSLSGSDDKNLWGEEKNRLDTMKRLRKHYDLDHVFDPLDIDVELGRTRVRLEGGIIQKVKSFRSGQYILEDG-TMIGQWELLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGMLLDVDGGMERAAATGDKVDPVSNLPLDDLEVLKNKTERVRQLSLEIFTKASVQDLLP 1068
            K AR  K  G   + ST L + L EP+L C++ F+ENNR+ + E  +    +A + P KPAG G++AD A  L++LS  K+    + + ++ P+S+                           ++  Y+LD+ FDP DI VE+GRT V   G  +Q V++F  G Y L D  + + QW++L  RHG+GVTLEQD+ RYI QL   + +  S  VP I   D  + DGM+LDV GG+  A  + D +D +S L  ++L  +K  T+RVR  +LEIFT +SV+D+LP
Sbjct:   84 KTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSS------------------------KSEIKSQYELDYAFDPSDIGVEVGRTTVTW-GNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.160e-46
Identity = 107/285 (37.54%), Postives = 160/285 (56.14%), Query Frame = 1 
Query:  217 KQARKRKAAGTARVDSTQLGRWLTEPVLPCLDKFIENNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSKSKEGGFRVFKDIFLPQSNIDLLSLSGSDDKNLWGEEKNRLDTMKRLRKHYDLDHVFDPLDIDVELGRTRVRLEGGIIQKVKSFRSGQYILEDGTM-IGQWELLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGMLLDVDGGMERAAATGDKVDPVSNLPLDDLEVLKNKTERVRQLSLEIFTKASVQDLLP 1068
            K AR  K  G   + ST L + L EP+LPC++ F+ENNR+ + E  +    +A +T  KPAG G++AD A  L++LS  K+ G  + + ++ P+S++                          ++  Y+LD+ F+P  I VE+G+T V  +G + QKV++F  G Y L D    + QW++L  R G GVTLEQD+ RYI QL   + +  S  VP I   D  + DGM+LDVDG + RA    D +D  S L  + L  +K  T++VR  +L+IFT +SV+D+LP
Sbjct:  634 KTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGA------------------------IKSQYELDYAFNPSHIGVEVGKTTVMWKGKV-QKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILP 892
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.000e-22
Identity = 62/162 (38.27%), Postives = 99/162 (61.11%), Query Frame = 1 
Query:  586 LRKHYDLDHVFDPLDIDVELGRTRVRLEGGIIQKVKSFRSGQYILEDGTMIGQWELLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGMLLDVDGGMERAAATGDKVDPVSN-LPLDDLEVLKNKTERVRQLSLEIFTKASVQDLLP 1068
            L+ ++D +++F+P  I+V +G TRV+++G I   V+SF  G+Y L     I QWELL  R G+G TL+ ++ R+I Q A  + + +++ VPY        T+GML ++   +ERA A  D +D  SN + L++L  L+   E++R LSLEIFT   + + LP
Sbjct:  216 LKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFV-VESFDHGKYNLAGHKPITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIA-TEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.430e-20
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:  220 QARKRKAAGTARVDSTQLGRWLTEPVLPCLDKFIENNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPL 435
            Q R+R+A GT RVDST+LGRWLTEP LPC++ FI+ NRK+A ERAK+HEG+A  TP +P GVG++ADLA PL
Sbjct:  553 QLRQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624
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BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-14
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:  565 RLDTMKRLRKHYDLDHVFDPLDIDVELG------RTRVRLEGGIIQKVKSFRSGQYILEDGTMIGQWELLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGMLLDVDGGMER 927
            R D +  L   +   ++F+P  I V L        T+V + GG    VKSF +G+Y LEDGT IGQWELL TR G GVTL+ +  R++R L A +T  +++ VP+   G   M+ GML +VD  + R
Sbjct:  291 RRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEI-GGRELVVKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGN-MSGGMLWNVDDAITR 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig102.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L612_9PHAE1.010e-9558.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0000161E592.140e-5138.25hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE1.160e-4637.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE9.000e-2238.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA9_ECTSI1.430e-2066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ65_ECTSI1.010e-1440.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig102contigP-fluviatile_contig102:33226..34293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7FHJ0
EggNOG OGs2EVBK@1,2SXC2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1068
Cds size1068
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.2181618-CDS-P-fluviatile_contig102:33225..342931622815422.2181618-CDS-P-fluviatile_contig102:33225..34293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig102 33226..34293 -
1693561798.5429912-CDS-P-fluviatile_contig102:33225..342931693561798.5429912-CDS-P-fluviatile_contig102:33225..34293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig102 33226..34293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig102.947.1prot_P-fluviatile_contig102.947.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig102 33226..34293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig102.947.1

>prot_P-fluviatile_contig102.947.1 ID=prot_P-fluviatile_contig102.947.1|Name=mRNA_P-fluviatile_contig102.947.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=356bp
DGDVDAADGGATGVAPMEVGDDSDGFGDFGAGTGGGSWSDSDSDGEGGGA
EGGDSGSGGDSDSDSGGGEKVAKQARKRKAAGTARVDSTQLGRWLTEPVL
PCLDKFIENNRKLAAERAKNHEGSARQTPGKPAGVGSVADLAGPLSLLSK
SKEGGFRVFKDIFLPQSNIDLLSLSGSDDKNLWGEEKNRLDTMKRLRKHY
DLDHVFDPLDIDVELGRTRVRLEGGIIQKVKSFRSGQYILEDGTMIGQWE
LLSTRHGKGVTLEQDVARYIRQLAAVHTITLSQIVPYISGGDTTMTDGML
LDVDGGMERAAATGDKVDPVSNLPLDDLEVLKNKTERVRQLSLEIFTKAS
VQDLLP
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mRNA from alignment at P-fluviatile_contig102:33226..34293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig102.947.1 ID=mRNA_P-fluviatile_contig102.947.1|Name=mRNA_P-fluviatile_contig102.947.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-fluviatile_contig102:33226..34293- (Porterinema fluviatile SAG_2381)
GATGGCGACGTGGACGCTGCCGACGGGGGTGCGACAGGAGTCGCTCCCAT
GGAGGTGGGCGACGATAGCGACGGCTTTGGAGACTTTGGTGCTGGTACCG
GGGGTGGCAGCTGGAGCGACAGCGACAGTGATGGCGAAGGGGGCGGTGCC
GAGGGTGGCGACAGCGGCAGCGGTGGCGACAGCGACAGCGACAGCGGTGG
CGGTGAGAAAGTTGCCAAGCAAGCACGAAAGCGCAAGGCAGCTGGCACGG
CGAGAGTAGACAGCACGCAACTTGGTCGATGGCTGACGGAACCGGTCCTG
CCCTGCTTGGACAAGTTCATCGAAAACAATCGAAAGCTCGCCGCTGAGCG
AGCAAAAAACCACGAGGGTTCGGCGCGTCAGACACCAGGGAAGCCTGCCG
GAGTGGGTTCGGTCGCGGATCTTGCCGGTCCCCTTTCTCTCCTGTCGAAG
AGCAAGGAAGGTGGATTCCGAGTATTCAAGGACATTTTTCTCCCGCAATC
CAACATAGACCTGCTCTCGCTGAGCGGGAGCGATGACAAAAACCTATGGG
GGGAGGAGAAAAACCGTCTGGACACGATGAAAAGACTCCGGAAACACTAC
GACTTGGATCACGTCTTTGATCCTTTGGACATCGATGTGGAGTTGGGGAG
GACAAGGGTTCGGCTCGAAGGCGGGATCATCCAGAAGGTGAAGAGTTTCA
GGAGCGGTCAGTACATTCTGGAAGACGGAACGATGATCGGTCAATGGGAG
CTTTTGTCCACGCGACACGGGAAAGGCGTGACGCTAGAGCAGGACGTCGC
GCGGTACATTCGACAACTGGCCGCCGTGCACACCATCACCCTGAGTCAAA
TCGTGCCGTACATCTCGGGGGGCGACACGACAATGACTGATGGGATGCTG
CTGGACGTCGACGGTGGTATGGAACGTGCGGCAGCCACCGGTGACAAGGT
AGACCCCGTGAGCAACCTACCACTGGATGATCTTGAGGTACTAAAGAACA
AGACGGAAAGGGTCAGGCAGCTTTCTCTTGAAATCTTTACCAAGGCCAGC
GTACAAGACCTCCTGCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig102:33226..34293-

>mRNA_P-fluviatile_contig102.947.1 ID=mRNA_P-fluviatile_contig102.947.1|Name=mRNA_P-fluviatile_contig102.947.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2136bp|location=Sequence derived from alignment at P-fluviatile_contig102:33226..34293- (Porterinema fluviatile SAG_2381)
GATGGCGACGTGGACGCTGCCGACGGGGGTGCGACAGGAGTCGCTCCCAT
GGAGGTGGGCGACGATAGCGACGGCTTTGGAGACTTTGGTGCTGGTACCG
GGGGTGGCAGCTGGAGCGACAGCGACAGTGATGGCGAAGGGGGCGGTGCC
GAGGGTGGCGACAGCGGCAGCGGTGGCGACAGCGACAGCGACAGCGGTGG
CGGTGAGAAAGTTGCCAAGCAAGCACGAAAGCGCAAGGCAGCTGGCACGG
CGAGAGTAGACAGCACGCAACTTGGTCGATGGCTGACGGAACCGGTCCTG
CCCTGCTTGGACAAGTTCATCGAAAACAATCGAAAGCTCGCCGCTGAGCG
AGCAAAAAACCACGAGGGTTCGGCGCGTCAGACACCAGGGAAGCCTGCCG
GAGTGGGTTCGGTCGCGGATCTTGCCGGTCCCCTTTCTCTCCTGTCGAAG
AGCAAGGAAGGTGGATTCCGAGTATTCAAGGACATTTTTCTCCCGCAATC
CAACATAGACCTGCTCTCGCTGAGCGGGAGCGATGACAAAAACCTATGGG
GGGAGGAGAAAAACCGTCTGGACACGATGAAAAGACTCCGGAAACACTAC
GACTTGGATCACGTCTTTGATCCTTTGGACATCGATGTGGAGTTGGGGAG
GACAAGGGTTCGGCTCGAAGGCGGGATCATCCAGAAGGTGAAGAGTTTCA
GGAGCGGTCAGTACATTCTGGAAGACGGAACGATGATCGGTCAATGGGAG
CTTTTGTCCACGCGACACGGGAAAGGCGTGACGCTAGAGCAGGACGTCGC
GCGGTACATTCGACAACTGGCCGCCGTGCACACCATCACCCTGAGTCAAA
TCGTGCCGTACATCTCGGGGGGCGACACGACAATGACTGATGGGATGCTG
CTGGACGTCGACGGTGGTATGGAACGTGCGGCAGCCACCGGTGACAAGGT
AGACCCCGTGAGCAACCTACCACTGGATGATCTTGAGGTACTAAAGAACA
AGACGGAAAGGGTCAGGCAGCTTTCTCTTGAAATCTTTACCAAGGCCAGC
GTACAAGACCTCCTGCCCGATGGCGACGTGGACGCTGCCGACGGGGGTGC
GACAGGAGTCGCTCCCATGGAGGTGGGCGACGATAGCGACGGCTTTGGAG
ACTTTGGTGCTGGTACCGGGGGTGGCAGCTGGAGCGACAGCGACAGTGAT
GGCGAAGGGGGCGGTGCCGAGGGTGGCGACAGCGGCAGCGGTGGCGACAG
CGACAGCGACAGCGGTGGCGGTGAGAAAGTTGCCAAGCAAGCACGAAAGC
GCAAGGCAGCTGGCACGGCGAGAGTAGACAGCACGCAACTTGGTCGATGG
CTGACGGAACCGGTCCTGCCCTGCTTGGACAAGTTCATCGAAAACAATCG
AAAGCTCGCCGCTGAGCGAGCAAAAAACCACGAGGGTTCGGCGCGTCAGA
CACCAGGGAAGCCTGCCGGAGTGGGTTCGGTCGCGGATCTTGCCGGTCCC
CTTTCTCTCCTGTCGAAGAGCAAGGAAGGTGGATTCCGAGTATTCAAGGA
CATTTTTCTCCCGCAATCCAACATAGACCTGCTCTCGCTGAGCGGGAGCG
ATGACAAAAACCTATGGGGGGAGGAGAAAAACCGTCTGGACACGATGAAA
AGACTCCGGAAACACTACGACTTGGATCACGTCTTTGATCCTTTGGACAT
CGATGTGGAGTTGGGGAGGACAAGGGTTCGGCTCGAAGGCGGGATCATCC
AGAAGGTGAAGAGTTTCAGGAGCGGTCAGTACATTCTGGAAGACGGAACG
ATGATCGGTCAATGGGAGCTTTTGTCCACGCGACACGGGAAAGGCGTGAC
GCTAGAGCAGGACGTCGCGCGGTACATTCGACAACTGGCCGCCGTGCACA
CCATCACCCTGAGTCAAATCGTGCCGTACATCTCGGGGGGCGACACGACA
ATGACTGATGGGATGCTGCTGGACGTCGACGGTGGTATGGAACGTGCGGC
AGCCACCGGTGACAAGGTAGACCCCGTGAGCAACCTACCACTGGATGATC
TTGAGGTACTAAAGAACAAGACGGAAAGGGTCAGGCAGCTTTCTCTTGAA
ATCTTTACCAAGGCCAGCGTACAAGACCTCCTGCCC
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