mRNA_P-fluviatile_contig102.944.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig102.944.1
Unique NamemRNA_P-fluviatile_contig102.944.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig102.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig102contigP-fluviatile_contig102:6988..7539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.024669-CDS-P-fluviatile_contig102:6987..75391622815422.024669-CDS-P-fluviatile_contig102:6987..7539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig102 6988..7539 +
1693561798.499522-CDS-P-fluviatile_contig102:6987..75391693561798.499522-CDS-P-fluviatile_contig102:6987..7539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig102 6988..7539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig102.944.1prot_P-fluviatile_contig102.944.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig102 6988..7539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig102.944.1

>prot_P-fluviatile_contig102.944.1 ID=prot_P-fluviatile_contig102.944.1|Name=mRNA_P-fluviatile_contig102.944.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=184bp
GCFYSGDRGQPASTPGDRGQAASTLATGGQPASTLATGARLLLLWRRGPG
CFYSGDRGQAASTLATRARLLLLWRQGSGCFYSGDRGLYLLLLWRQRPGC
FYSGHRGQAALLWRQGPGCFYSDDRVRLLLLWRQGARLLLLWRQGPTYRQ
NPEFVFLTSPLELWEQKTYVDLAKLVTVTPAGP*
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mRNA from alignment at P-fluviatile_contig102:6988..7539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig102.944.1 ID=mRNA_P-fluviatile_contig102.944.1|Name=mRNA_P-fluviatile_contig102.944.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=552bp|location=Sequence derived from alignment at P-fluviatile_contig102:6988..7539+ (Porterinema fluviatile SAG_2381)
GGCTGCTTCTACTCTGGCGACAGAGGCCAGCCTGCTTCTACTCCTGGCGA
CAGAGGCCAGGCTGCTTCTACTCTGGCGACAGGGGGCCAGCCTGCTTCTA
CTCTGGCGACAGGGGCCAGGCTGCTTCTACTCTGGCGACGGGGGCCAGGC
TGCTTCTACTCTGGCGACAGAGGCCAGGCTGCTTCTACTCTGGCGACACG
GGCCAGGCTGCTTCTACTCTGGCGACAGGGGTCAGGCTGCTTCTACTCTG
GCGACAGGGGCCTTTATCTGCTTCTACTCTGGCGACAGAGGCCAGGCTGC
TTCTACTCTGGCCACAGGGGCCAGGCTGCTTTACTCTGGAGACAGGGGCC
AGGCTGCTTCTACTCTGACGACAGGGTCAGGCTGCTTCTACTCTGGCGAC
AGGGGGCCAGGCTGCTTCTACTCTGGCGACAGGGGCCAACTTACCGGCAA
AATCCAGAATTCGTGTTCTTGACTTCTCCGCTTGAGCTCTGGGAACAAAA
AACATATGTCGATCTTGCTAAATTGGTGACGGTGACACCTGCGGGTCCGT
GA
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Coding sequence (CDS) from alignment at P-fluviatile_contig102:6988..7539+

>mRNA_P-fluviatile_contig102.944.1 ID=mRNA_P-fluviatile_contig102.944.1|Name=mRNA_P-fluviatile_contig102.944.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1104bp|location=Sequence derived from alignment at P-fluviatile_contig102:6988..7539+ (Porterinema fluviatile SAG_2381)
GGCTGCTTCTACTCTGGCGACAGAGGCCAGCCTGCTTCTACTCCTGGCGA
CAGAGGCCAGGCTGCTTCTACTCTGGCGACAGGGGGCCAGCCTGCTTCTA
CTCTGGCGACAGGGGCCAGGCTGCTTCTACTCTGGCGACGGGGGCCAGGC
TGCTTCTACTCTGGCGACAGAGGCCAGGCTGCTTCTACTCTGGCGACACG
GGCCAGGCTGCTTCTACTCTGGCGACAGGGGTCAGGCTGCTTCTACTCTG
GCGACAGGGGCCTTTATCTGCTTCTACTCTGGCGACAGAGGCCAGGCTGC
TTCTACTCTGGCCACAGGGGCCAGGCTGCTTTACTCTGGAGACAGGGGCC
AGGCTGCTTCTACTCTGACGACAGGGTCAGGCTGCTTCTACTCTGGCGAC
AGGGGGCCAGGCTGCTTCTACTCTGGCGACAGGGGCCAACTTACCGGCAA
AATCCAGAATTCGTGTTCTTGACTTCTCCGCTTGAGCTCTGGGAACAAAA
AACATATGTCGATCTTGCTAAATTGGTGACGGTGACACCTGCGGGTCCGT
GAGGCTGCTTCTACTCTGGCGACAGAGGCCAGCCTGCTTCTACTCCTGGC
GACAGAGGCCAGGCTGCTTCTACTCTGGCGACAGGGGGCCAGCCTGCTTC
TACTCTGGCGACAGGGGCCAGGCTGCTTCTACTCTGGCGACGGGGGCCAG
GCTGCTTCTACTCTGGCGACAGAGGCCAGGCTGCTTCTACTCTGGCGACA
CGGGCCAGGCTGCTTCTACTCTGGCGACAGGGGTCAGGCTGCTTCTACTC
TGGCGACAGGGGCCTTTATCTGCTTCTACTCTGGCGACAGAGGCCAGGCT
GCTTCTACTCTGGCCACAGGGGCCAGGCTGCTTTACTCTGGAGACAGGGG
CCAGGCTGCTTCTACTCTGACGACAGGGTCAGGCTGCTTCTACTCTGGCG
ACAGGGGGCCAGGCTGCTTCTACTCTGGCGACAGGGGCCAACTTACCGGC
AAAATCCAGAATTCGTGTTCTTGACTTCTCCGCTTGAGCTCTGGGAACAA
AAAACATATGTCGATCTTGCTAAATTGGTGACGGTGACACCTGCGGGTCC
GTGA
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