mRNA_P-fluviatile_contig101.937.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig101.937.1
Unique NamemRNA_P-fluviatile_contig101.937.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.770e-72
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M FLKEYYP  + LGFSLFLA +IFGASY+LAISD D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW VSLS+LPSIGYWSM+DFLFELVVGF+YAWQIGSLDWE
Sbjct:    1 MFFLKEYYPALIFLGFSLFLAALIFGASYILAISDSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 5.060e-72
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M FLKEYYPV + LGFSL LAG+IFGAS++LA+SD D EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW VSLS+LPSIGYWSMLDFLFELVVGF+YAWQIGSLDWE
Sbjct:    1 MFFLKEYYPVLIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 208 bits (530), Expect = 9.430e-68
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M  LKEYYP  + L FS  LA IIFGASY+LA+S  D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW VSLS+LPSIGYWSM+DFLFELVVGF+YAWQIGSLDWE
Sbjct:    1 MFLLKEYYPALIFLVFSFVLAAIIFGASYILAVSSADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.600e-65
Identity = 93/120 (77.50%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M+ L EYYP+ + + FSLFL+ +IFGASY  +I++PDNEK+SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWVV+LSELP++GYWSM+DF+ ELV+GF+YAWQIGSLDWE
Sbjct:    1 MLDLPEYYPILLFITFSLFLSLLIFGASYTFSIAEPDNEKVSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDWE 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 201 bits (510), Expect = 1.060e-64
Identity = 94/120 (78.33%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M FL+EY P  + L FSL LA +IFGASY LA+++ DNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW  SLS+LP +GYWS++DFLFELVVGF+YAWQIGSLDWE
Sbjct:    1 MFFLREYSPALIYLCFSLILASVIFGASYTLALAESDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.010e-62
Identity = 92/120 (76.67%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            M +L EYY + + L  S+ LA IIFGASYLLA+S+ D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW +SLS++PSIGYWSM+DFLFELVVGF+YAW+IGSL+W 
Sbjct:    1 MFYLHEYYSILIFLVISVLLAFIIFGASYLLALSNSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEWS 120          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 192 bits (487), Expect = 3.280e-61
Identity = 90/119 (75.63%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    1 MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDW 357
            M +L EYYPV +    S+ LA +IFG SY+LA S  D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW VSLS+LPS+GYWSM+DFLFEL+VGF+YAW+IGSL+W
Sbjct:    1 MFYLHEYYPVLLFFLISILLAFLIFGLSYILAFSKADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.700e-60
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1
Query:   16 EYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDW 357
            EYYPV + L     LA IIFGASY L  S  DNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW ++LS+LPS+GYWSM+DFL ELVVGF+YAWQIGSL+W
Sbjct:    6 EYYPVLLFLVVGFILAVIIFGASYFLVFSKADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.430e-57
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   13 KEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELP-SIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            +EYYP+ V    S+ LAG+IFGASY LA++ PD EKLSSYECGFDPYEDARNAFDVRFYLVAILFL+FD+E +FLFPW V L +   S+G WSM+DFLFEL+VGFVYAWQIGSLDWE
Sbjct:    7 QEYYPILVFTFLSIGLAGLIFGASYALALAKPDTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDWE 123          
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Match: D2Z252_HETAK (NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z252_HETAK)

HSP 1 Score: 177 bits (449), Expect = 2.240e-55
Identity = 78/119 (65.55%), Postives = 103/119 (86.55%), Query Frame = 1
Query:    4 VFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDFLFELVVGFVYAWQIGSLDWE 360
            +F++EY PV + LG S+ L+G+IFG SY+LAI  PD EKLS YECGFDPYEDAR AFDVRFYLVAILF++FD+E ++LFPW +SL+++ S+G+W+MLDFL EL +GFVYAW++G+L+WE
Sbjct:    4 LFIQEYSPVLIFLGISIVLSGVIFGLSYVLAIHKPDTEKLSPYECGFDPYEDARQAFDVRFYLVAILFIIFDLEAMYLFPWAISLNQIGSMGFWTMLDFLVELGIGFVYAWRVGALEWE 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig101.937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1XDC4_9PHAE1.770e-7288.33NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
E6ZET4_ECTSI5.060e-7288.33NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
Q94YZ1_PYLLI9.430e-6884.17NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
A0A8E8U4L6_9PHAE2.600e-6577.50NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
A0A0U1WNN7_SARFS1.060e-6478.33NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
A0A4Y5T7V9_9PHAE1.010e-6276.67NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
Q2TU99_DICDH3.280e-6175.63NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
A0A8F0K0X7_9PHAE2.700e-6079.82NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A7S6UA31_9STRA3.430e-5774.36NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]
D2Z252_HETAK2.240e-5565.55NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Het... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig101contigP-fluviatile_contig101:17327..17689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.4
Seed ortholog evalue3.4e-32
Seed eggNOG ortholog1380394.JADL01000005_gene5381
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RGUT@1224,2JSW8@204441,2U72Q@28211,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.6765256-CDS-P-fluviatile_contig101:17326..176891622815421.6765256-CDS-P-fluviatile_contig101:17326..17689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 17327..17689 -
1693561797.978843-CDS-P-fluviatile_contig101:17326..176891693561797.978843-CDS-P-fluviatile_contig101:17326..17689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 17327..17689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig101.937.1prot_P-fluviatile_contig101.937.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig101 17327..17689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig101.937.1

>prot_P-fluviatile_contig101.937.1 ID=prot_P-fluviatile_contig101.937.1|Name=mRNA_P-fluviatile_contig101.937.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MVFLKEYYPVFVLLGFSLFLAGIIFGASYLLAISDPDNEKLSSYECGFDP
YEDARNAFDVRFYLVAILFLLFDIETIFLFPWVVSLSELPSIGYWSMLDF
LFELVVGFVYAWQIGSLDWE*
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mRNA from alignment at P-fluviatile_contig101:17327..17689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig101.937.1 ID=mRNA_P-fluviatile_contig101.937.1|Name=mRNA_P-fluviatile_contig101.937.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=363bp|location=Sequence derived from alignment at P-fluviatile_contig101:17327..17689- (Porterinema fluviatile SAG_2381)
ATGGTTTTTTTGAAAGAATATTACCCCGTATTTGTTTTATTAGGTTTTAG TTTATTTTTAGCTGGGATTATTTTTGGTGCGTCTTATCTTTTAGCTATTT CGGATCCCGATAATGAAAAATTGTCGTCTTATGAATGTGGATTTGATCCT TATGAAGACGCCCGTAACGCTTTTGATGTTCGGTTTTACTTAGTTGCTAT TCTTTTTCTGCTTTTTGATATTGAAACTATTTTTTTGTTTCCTTGGGTTG TATCACTGAGTGAGTTGCCTTCAATTGGTTATTGGTCTATGCTAGATTTT CTTTTTGAACTTGTTGTTGGGTTTGTTTATGCCTGGCAAATTGGAAGCCT AGATTGGGAATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig101:17327..17689-

>mRNA_P-fluviatile_contig101.937.1 ID=mRNA_P-fluviatile_contig101.937.1|Name=mRNA_P-fluviatile_contig101.937.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig101:17327..17689- (Porterinema fluviatile SAG_2381)
ATGGTTTTTTTGAAAGAATATTACCCCGTATTTGTTTTATTAGGTTTTAG
TTTATTTTTAGCTGGGATTATTTTTGGTGCGTCTTATCTTTTAGCTATTT
CGGATCCCGATAATGAAAAATTGTCGTCTTATGAATGTGGATTTGATCCT
TATGAAGACGCCCGTAACGCTTTTGATGTTCGGTTTTACTTAGTTGCTAT
TCTTTTTCTGCTTTTTGATATTGAAACTATTTTTTTGTTTCCTTGGGTTG
TATCACTGAGTGAGTTGCCTTCAATTGGTTATTGGTCTATGCTAGATTTT
CTTTTTGAACTTGTTGTTGGGTTTGTTTATGCCTGGCAAATTGGAAGCCT
AGATTGGGAATGAATGGTTTTTTTGAAAGAATATTACCCCGTATTTGTTT
TATTAGGTTTTAGTTTATTTTTAGCTGGGATTATTTTTGGTGCGTCTTAT
CTTTTAGCTATTTCGGATCCCGATAATGAAAAATTGTCGTCTTATGAATG
TGGATTTGATCCTTATGAAGACGCCCGTAACGCTTTTGATGTTCGGTTTT
ACTTAGTTGCTATTCTTTTTCTGCTTTTTGATATTGAAACTATTTTTTTG
TTTCCTTGGGTTGTATCACTGAGTGAGTTGCCTTCAATTGGTTATTGGTC
TATGCTAGATTTTCTTTTTGAACTTGTTGTTGGGTTTGTTTATGCCTGGC
AAATTGGAAGCCTAGATTGGGAATGA
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