mRNA_P-fluviatile_contig101.941.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig101.941.1
Unique NamemRNA_P-fluviatile_contig101.941.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig101.941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig101contigP-fluviatile_contig101:28006..29652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size773
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig101.941.1prot_P-fluviatile_contig101.941.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig101 28007..29357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.518416-UTR-P-fluviatile_contig101:28005..280061622815421.518416-UTR-P-fluviatile_contig101:28005..28006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig101 28006..28006 +
1693561797.924118-UTR-P-fluviatile_contig101:28005..280061693561797.924118-UTR-P-fluviatile_contig101:28005..28006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig101 28006..28006 +
1622815421.5513942-UTR-P-fluviatile_contig101:29357..296521622815421.5513942-UTR-P-fluviatile_contig101:29357..29652Porterinema fluviatile SAG_2381UTRP-fluviatile_contig101 29358..29652 +
1693561797.948276-UTR-P-fluviatile_contig101:29357..296521693561797.948276-UTR-P-fluviatile_contig101:29357..29652Porterinema fluviatile SAG_2381UTRP-fluviatile_contig101 29358..29652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.5308733-CDS-P-fluviatile_contig101:28006..280441622815421.5308733-CDS-P-fluviatile_contig101:28006..28044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 28007..28044 +
1693561797.9316537-CDS-P-fluviatile_contig101:28006..280441693561797.9316537-CDS-P-fluviatile_contig101:28006..28044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 28007..28044 +
1622815421.5414755-CDS-P-fluviatile_contig101:28918..293571622815421.5414755-CDS-P-fluviatile_contig101:28918..29357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 28919..29357 +
1693561797.939712-CDS-P-fluviatile_contig101:28918..293571693561797.939712-CDS-P-fluviatile_contig101:28918..29357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig101 28919..29357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig101.941.1

>prot_P-fluviatile_contig101.941.1 ID=prot_P-fluviatile_contig101.941.1|Name=mRNA_P-fluviatile_contig101.941.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=159bp
MSYHRQPSNTCNRAKPDKPSDGIPAGVVRRGVMNVTSVDLSKVLKYEGKE
FITSDILAIIATEDGKVAPASGGAGAGAAELFGGQRRSSRNPQEHPLRTP
ALIVMTSEEHRQDILRGRGRASRGELGAGDVAAMHGSWQLLQGSLTDPVE
DVSSSEQW*
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mRNA from alignment at P-fluviatile_contig101:28006..29652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig101.941.1 ID=mRNA_P-fluviatile_contig101.941.1|Name=mRNA_P-fluviatile_contig101.941.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1647bp|location=Sequence derived from alignment at P-fluviatile_contig101:28006..29652+ (Porterinema fluviatile SAG_2381)
CATGTCCTATCATCGACAGCCTAGCAACACTTGCAACAGGTGCGTGCATG
CTCAACAGCAGTTACGCTTTCCCAACATTCATTCTTTTGCGGCCCTTTTT
CGTATCTGCAGTAGGACGACCGAACTTCCCCGTCGATGGTTTGTTACTGG
CTGTCGCATACCGAACACTCGCGGCCGTTGCGTGCGTGCTCAACAGGAGG
CGTGTTGTTCGATATTTCATTTTTTTCCGACGCCTCGATTGCAGTTTTGT
TTCTTCTTCTTGAACACGCACACGTGGACAGGAGTGCCGATAAAAAGAAG
AAGGAAGCCACCAACTGCAGGCTGTTGAGGCATCAAAAATGGGTAGGTCA
TCCAGCACCGAGTGGTTTCCCCTAGTGGATCCCCTCGCATCTTGCTGTTG
GTCGCGAGTGCTGCTTTTGTCCACCGATCTCTGCTTTTGCCCTGCCACGC
TATCTCTGCGCCTTGCCTTTTATCGCTCTTCTCCGATGGCATGCGTCCCC
CCACGCCTTGCCTGTGCGGACCTTTTCTTGTTGTCCCGCGTGGTCCTCGC
CCTCGCCGCCGGCTTGTTTGTTCTATTGCTCCTCTCTGCTGGCGTGCTCT
CCCGCCACCACGCGTCTTCCGTCCCTTTTAGCGTGGACCCTCTGCTCGAC
TTGCTCCGCCACACATCCTCTGCAAGCGGAGTGTGTTTTTATTTCATTCA
CAAAGGTGTTTTGTCGTCTTCTGTCGACGTCGGGTCGCCACCTTACTCGA
AAGACTCACGCGTCCCATCCTTCCAGTCACAAGTCGTCCGTGTTTTGGTT
TGTGTTTCTTGCGTGGGTACAACCTCTCTCACCCAGCTACGAACAAGGCC
TCACACCCTTCCTCCATCACCCACGTATCGTGTCGCTGCCACCAAAACCC
GATTGATTTACAGAGCTAAGCCCGACAAACCTTCCGATGGCATCCCAGCT
GGAGTGGTTCGTCGCGGCGTGATGAACGTGACTTCGGTCGACCTGTCGAA
AGTGCTTAAGTACGAAGGCAAAGAGTTCATAACGTCCGACATCCTTGCCA
TCATTGCAACGGAAGATGGTAAGGTCGCTCCGGCGAGTGGCGGGGCTGGC
GCCGGGGCGGCGGAGCTGTTTGGGGGGCAACGACGAAGTAGTCGGAACCC
GCAAGAGCATCCATTGCGTACACCGGCCCTTATCGTGATGACCAGCGAAG
AACACCGGCAAGACATTCTGCGCGGACGAGGGAGAGCAAGCCGTGGCGAG
CTAGGCGCAGGCGACGTCGCTGCGATGCATGGCTCGTGGCAGCTGCTGCA
AGGAAGCCTCACGGATCCCGTTGAGGATGTGAGCAGCAGCGAACAGTGGT
AGATTTGACCTATCTTTGGCACACGAAGCGCACACACAACGCGCGTGAGG
TTGGACGCCCGCATCGTGTTCATCCTTTGGATGTTTTTCCGTTGTTCGTG
TAGAGAGGTGTGTGAGCTGACTCTACTGTCTGTGGACGGAGCGCCGTTCG
GGGCGGGTACCATCAACGTCGACTCCAAGTGGAGCGGCATGTCAGACGAA
GCGGAAGGAAAATATACCCAGCTTCCCCCTCGCCGGCAGCAGATGCAAGC
CCACCGAGAGTTGTCCCTTGCGAAGGAGGCCACCAATGATTCCGAGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig101:28006..29652+

>mRNA_P-fluviatile_contig101.941.1 ID=mRNA_P-fluviatile_contig101.941.1|Name=mRNA_P-fluviatile_contig101.941.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=954bp|location=Sequence derived from alignment at P-fluviatile_contig101:28006..29652+ (Porterinema fluviatile SAG_2381)
ATGTCCTATCATCGACAGCCTAGCAACACTTGCAACAGATGTCCTATCAT
CGACAGCCTAGCAACACTTGCAACAGAGCTAAGCCCGACAAACCTTCCGA
TGGCATCCCAGCTGGAGTGGTTCGTCGCGGCGTGATGAACGTGACTTCGG
TCGACCTGTCGAAAGTGCTTAAGTACGAAGGCAAAGAGTTCATAACGTCC
GACATCCTTGCCATCATTGCAACGGAAGATGGTAAGGTCGCTCCGGCGAG
TGGCGGGGCTGGCGCCGGGGCGGCGGAGCTGTTTGGGGGGCAACGACGAA
GTAGTCGGAACCCGCAAGAGCATCCATTGCGTACACCGGCCCTTATCGTG
ATGACCAGCGAAGAACACCGGCAAGACATTCTGCGCGGACGAGGGAGAGC
AAGCCGTGGCGAGCTAGGCGCAGGCGACGTCGCTGCGATGCATGGCTCGT
GGCAGCTGCTGCAAGGAAGCCTCACGGATCCCGTTGAGGATGTGAGCAGC
AGCGAACAGTGGTAGAGCTAAGCCCGACAAACCTTCCGATGGCATCCCAG
CTGGAGTGGTTCGTCGCGGCGTGATGAACGTGACTTCGGTCGACCTGTCG
AAAGTGCTTAAGTACGAAGGCAAAGAGTTCATAACGTCCGACATCCTTGC
CATCATTGCAACGGAAGATGGTAAGGTCGCTCCGGCGAGTGGCGGGGCTG
GCGCCGGGGCGGCGGAGCTGTTTGGGGGGCAACGACGAAGTAGTCGGAAC
CCGCAAGAGCATCCATTGCGTACACCGGCCCTTATCGTGATGACCAGCGA
AGAACACCGGCAAGACATTCTGCGCGGACGAGGGAGAGCAAGCCGTGGCG
AGCTAGGCGCAGGCGACGTCGCTGCGATGCATGGCTCGTGGCAGCTGCTG
CAAGGAAGCCTCACGGATCCCGTTGAGGATGTGAGCAGCAGCGAACAGTG
GTAG
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