mRNA_P-fluviatile_contig1.408.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.408.1
Unique NamemRNA_P-fluviatile_contig1.408.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4643458..4643779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.3081205-CDS-P-fluviatile_contig1:4643457..46437781622815270.3081205-CDS-P-fluviatile_contig1:4643457..4643778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643458..4643778 +
1693561322.0618298-CDS-P-fluviatile_contig1:4643457..46437781693561322.0618298-CDS-P-fluviatile_contig1:4643457..4643778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643458..4643778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.408.1prot_P-fluviatile_contig1.408.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4643458..4643778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.408.1

>prot_P-fluviatile_contig1.408.1 ID=prot_P-fluviatile_contig1.408.1|Name=mRNA_P-fluviatile_contig1.408.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
ALPVAHQCNVIVKVVKYGQSDGRGWRVGSVKISCWTLKKCGLCHRVLPST
ENHWGLRQRGVMSAPRLWPRLDCPSSSLVRFGAHHKAAACPPDCLRYTST
RVDRTII
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mRNA from alignment at P-fluviatile_contig1:4643458..4643779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.408.1 ID=mRNA_P-fluviatile_contig1.408.1|Name=mRNA_P-fluviatile_contig1.408.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=322bp|location=Sequence derived from alignment at P-fluviatile_contig1:4643458..4643779+ (Porterinema fluviatile SAG_2381)
GCTCTTCCTGTTGCACACCAGTGCAACGTGATCGTGAAGGTTGTGAAATA
CGGGCAGAGCGACGGGCGGGGTTGGCGCGTAGGGAGTGTCAAGATAAGTT
GTTGGACGCTGAAAAAGTGCGGTCTGTGCCACCGGGTACTGCCTTCAACG
GAAAATCACTGGGGCTTGCGGCAGCGGGGTGTCATGTCGGCCCCAAGACT
CTGGCCGCGGCTGGATTGTCCCTCCTCCTCTCTTGTTCGGTTTGGCGCTC
ACCACAAGGCGGCTGCTTGCCCGCCTGACTGTCTGCGGTACACGTCCACG
AGAGTTGACCGCACCATCATAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4643458..4643779+

>mRNA_P-fluviatile_contig1.408.1 ID=mRNA_P-fluviatile_contig1.408.1|Name=mRNA_P-fluviatile_contig1.408.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig1:4643458..4643779+ (Porterinema fluviatile SAG_2381)
GCTCTTCCTGTTGCACACCAGTGCAACGTGATCGTGAAGGTTGTGAAATA
CGGGCAGAGCGACGGGCGGGGTTGGCGCGTAGGGAGTGTCAAGATAAGTT
GTTGGACGCTGAAAAAGTGCGGTCTGTGCCACCGGGTACTGCCTTCAACG
GAAAATCACTGGGGCTTGCGGCAGCGGGGTGTCATGTCGGCCCCAAGACT
CTGGCCGCGGCTGGATTGTCCCTCCTCCTCTCTTGTTCGGTTTGGCGCTC
ACCACAAGGCGGCTGCTTGCCCGCCTGACTGTCTGCGGTACACGTCCACG
AGAGTTGACCGCACCATCATAGCTCTTCCTGTTGCACACCAGTGCAACGT
GATCGTGAAGGTTGTGAAATACGGGCAGAGCGACGGGCGGGGTTGGCGCG
TAGGGAGTGTCAAGATAAGTTGTTGGACGCTGAAAAAGTGCGGTCTGTGC
CACCGGGTACTGCCTTCAACGGAAAATCACTGGGGCTTGCGGCAGCGGGG
TGTCATGTCGGCCCCAAGACTCTGGCCGCGGCTGGATTGTCCCTCCTCCT
CTCTTGTTCGGTTTGGCGCTCACCACAAGGCGGCTGCTTGCCCGCCTGAC
TGTCTGCGGTACACGTCCACGAGAGTTGACCGCACCATCATA
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