mRNA_P-fluviatile_contig1.374.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.374.1
Unique NamemRNA_P-fluviatile_contig1.374.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4413719..4414538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size820
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.374.1prot_P-fluviatile_contig1.374.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4413751..4414482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.0998034-UTR-P-fluviatile_contig1:4413718..44137501622815270.0998034-UTR-P-fluviatile_contig1:4413718..4413750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4413719..4413750 +
1693561321.8861465-UTR-P-fluviatile_contig1:4413718..44137501693561321.8861465-UTR-P-fluviatile_contig1:4413718..4413750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4413719..4413750 +
1622815270.1339405-UTR-P-fluviatile_contig1:4414482..44145381622815270.1339405-UTR-P-fluviatile_contig1:4414482..4414538Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4414483..4414538 +
1693561321.9303067-UTR-P-fluviatile_contig1:4414482..44145381693561321.9303067-UTR-P-fluviatile_contig1:4414482..4414538Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4414483..4414538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.1204233-CDS-P-fluviatile_contig1:4413750..44144821622815270.1204233-CDS-P-fluviatile_contig1:4413750..4414482Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4413751..4414482 +
1693561321.9142902-CDS-P-fluviatile_contig1:4413750..44144821693561321.9142902-CDS-P-fluviatile_contig1:4413750..4414482Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4413751..4414482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.374.1

>prot_P-fluviatile_contig1.374.1 ID=prot_P-fluviatile_contig1.374.1|Name=mRNA_P-fluviatile_contig1.374.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=244bp
MCDCNRLAVPYGYGISYLCRRTWKDMEARQGQLHYLKTPIYARSAASLVF
SIVQLPSGHRRRAHDPIPALEPLTRVIRRYYKISSHISLSFSHHALFFFV
CVVLAVVFGPHATVILLHPSFALSFQPPFIFPDFFLPVSSKDQIPSNLIF
HIRRAWLRIGCGFVRKSALLNEISASPVADSGGKEGYILQLPGVHLAPCE
LIIFQFLHAQFDGEGTAARGRGSSSGQYAVVLVPTHVRRESHR*
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mRNA from alignment at P-fluviatile_contig1:4413719..4414538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.374.1 ID=mRNA_P-fluviatile_contig1.374.1|Name=mRNA_P-fluviatile_contig1.374.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=820bp|location=Sequence derived from alignment at P-fluviatile_contig1:4413719..4414538+ (Porterinema fluviatile SAG_2381)
ATCAACCACATATACACAAAGCCCCACCAATTATGTGCGACTGTAACCGA
CTGGCTGTACCGTATGGGTATGGCATATCCTATCTCTGCCGCCGCACATG
GAAGGACATGGAAGCACGGCAGGGACAGTTACATTATCTGAAGACTCCAA
TTTACGCGCGCTCAGCCGCCTCTCTCGTTTTTTCAATTGTGCAACTACCC
TCCGGTCACAGAAGGCGAGCACACGATCCGATACCAGCCCTGGAGCCTCT
AACTCGTGTTATCCGTCGATACTACAAAATCTCGTCACACATATCTCTCT
CCTTCAGTCATCATGCTTTATTTTTTTTTGTCTGCGTTGTGCTCGCTGTT
GTCTTCGGGCCCCACGCTACCGTGATTCTGCTGCATCCTTCCTTTGCGCT
CTCCTTCCAGCCCCCTTTTATTTTCCCGGATTTCTTTCTTCCCGTTTCGT
CAAAAGACCAGATTCCGTCGAACTTAATCTTCCACATTCGTCGGGCTTGG
CTGCGGATTGGCTGCGGATTTGTGCGAAAATCCGCCCTCCTGAATGAAAT
AAGCGCTTCCCCCGTGGCTGACTCCGGCGGGAAGGAAGGATATATTTTGC
AATTACCTGGAGTACACCTTGCCCCCTGTGAGTTAATAATTTTTCAGTTC
CTGCACGCTCAGTTTGACGGTGAGGGGACGGCAGCTCGGGGGCGGGGGAG
TAGCTCAGGGCAGTATGCGGTGGTTCTTGTACCCACGCATGTGCGCAGGG
AGAGCCACAGGTGAAGGCGATTGATTCGCGTAACGAAGGCATGAAAAGGT
GATGAAATCATCTGCAAAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4413719..4414538+

>mRNA_P-fluviatile_contig1.374.1 ID=mRNA_P-fluviatile_contig1.374.1|Name=mRNA_P-fluviatile_contig1.374.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1464bp|location=Sequence derived from alignment at P-fluviatile_contig1:4413719..4414538+ (Porterinema fluviatile SAG_2381)
ATGTGCGACTGTAACCGACTGGCTGTACCGTATGGGTATGGCATATCCTA
TCTCTGCCGCCGCACATGGAAGGACATGGAAGCACGGCAGGGACAGTTAC
ATTATCTGAAGACTCCAATTTACGCGCGCTCAGCCGCCTCTCTCGTTTTT
TCAATTGTGCAACTACCCTCCGGTCACAGAAGGCGAGCACACGATCCGAT
ACCAGCCCTGGAGCCTCTAACTCGTGTTATCCGTCGATACTACAAAATCT
CGTCACACATATCTCTCTCCTTCAGTCATCATGCTTTATTTTTTTTTGTC
TGCGTTGTGCTCGCTGTTGTCTTCGGGCCCCACGCTACCGTGATTCTGCT
GCATCCTTCCTTTGCGCTCTCCTTCCAGCCCCCTTTTATTTTCCCGGATT
TCTTTCTTCCCGTTTCGTCAAAAGACCAGATTCCGTCGAACTTAATCTTC
CACATTCGTCGGGCTTGGCTGCGGATTGGCTGCGGATTTGTGCGAAAATC
CGCCCTCCTGAATGAAATAAGCGCTTCCCCCGTGGCTGACTCCGGCGGGA
AGGAAGGATATATTTTGCAATTACCTGGAGTACACCTTGCCCCCTGTGAG
TTAATAATTTTTCAGTTCCTGCACGCTCAGTTTGACGGTGAGGGGACGGC
AGCTCGGGGGCGGGGGAGTAGCTCAGGGCAGTATGCGGTGGTTCTTGTAC
CCACGCATGTGCGCAGGGAGAGCCACAGGTGAATGTGCGACTGTAACCGA
CTGGCTGTACCGTATGGGTATGGCATATCCTATCTCTGCCGCCGCACATG
GAAGGACATGGAAGCACGGCAGGGACAGTTACATTATCTGAAGACTCCAA
TTTACGCGCGCTCAGCCGCCTCTCTCGTTTTTTCAATTGTGCAACTACCC
TCCGGTCACAGAAGGCGAGCACACGATCCGATACCAGCCCTGGAGCCTCT
AACTCGTGTTATCCGTCGATACTACAAAATCTCGTCACACATATCTCTCT
CCTTCAGTCATCATGCTTTATTTTTTTTTGTCTGCGTTGTGCTCGCTGTT
GTCTTCGGGCCCCACGCTACCGTGATTCTGCTGCATCCTTCCTTTGCGCT
CTCCTTCCAGCCCCCTTTTATTTTCCCGGATTTCTTTCTTCCCGTTTCGT
CAAAAGACCAGATTCCGTCGAACTTAATCTTCCACATTCGTCGGGCTTGG
CTGCGGATTGGCTGCGGATTTGTGCGAAAATCCGCCCTCCTGAATGAAAT
AAGCGCTTCCCCCGTGGCTGACTCCGGCGGGAAGGAAGGATATATTTTGC
AATTACCTGGAGTACACCTTGCCCCCTGTGAGTTAATAATTTTTCAGTTC
CTGCACGCTCAGTTTGACGGTGAGGGGACGGCAGCTCGGGGGCGGGGGAG
TAGCTCAGGGCAGTATGCGGTGGTTCTTGTACCCACGCATGTGCGCAGGG
AGAGCCACAGGTGA
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