mRNA_P-fluviatile_contig1.69.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.69.1
Unique NamemRNA_P-fluviatile_contig1.69.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1052608..1053402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size482
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.69.1prot_P-fluviatile_contig1.69.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1053036..1053371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.9742262-UTR-P-fluviatile_contig1:1052607..10526511622815268.9742262-UTR-P-fluviatile_contig1:1052607..1052651Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1052608..1052651 +
1693561318.6900723-UTR-P-fluviatile_contig1:1052607..10526511693561318.6900723-UTR-P-fluviatile_contig1:1052607..1052651Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1052608..1052651 +
1622815268.9890058-UTR-P-fluviatile_contig1:1052964..10530351622815268.9890058-UTR-P-fluviatile_contig1:1052964..1053035Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1052965..1053035 +
1693561318.708666-UTR-P-fluviatile_contig1:1052964..10530351693561318.708666-UTR-P-fluviatile_contig1:1052964..1053035Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1052965..1053035 +
1622815269.01818-UTR-P-fluviatile_contig1:1053371..10534021622815269.01818-UTR-P-fluviatile_contig1:1053371..1053402Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1053372..1053402 +
1693561319.109212-UTR-P-fluviatile_contig1:1053371..10534021693561319.109212-UTR-P-fluviatile_contig1:1053371..1053402Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1053372..1053402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.004318-CDS-P-fluviatile_contig1:1053035..10533711622815269.004318-CDS-P-fluviatile_contig1:1053035..1053371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1053036..1053371 +
1693561318.8362956-CDS-P-fluviatile_contig1:1053035..10533711693561318.8362956-CDS-P-fluviatile_contig1:1053035..1053371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1053036..1053371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.69.1

>prot_P-fluviatile_contig1.69.1 ID=prot_P-fluviatile_contig1.69.1|Name=mRNA_P-fluviatile_contig1.69.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MVEEGKPSWAQRRPAAVGDIIAPATVTATIGRTQDVGNTRTTSSTASQGN
ARRSRRRRKGPGRRRRRVEGRKLSVFAVEEAKQASSRGAQVACPSHLGLN
LLIPLILVVGG*
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mRNA from alignment at P-fluviatile_contig1:1052608..1053402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.69.1 ID=mRNA_P-fluviatile_contig1.69.1|Name=mRNA_P-fluviatile_contig1.69.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=795bp|location=Sequence derived from alignment at P-fluviatile_contig1:1052608..1053402+ (Porterinema fluviatile SAG_2381)
ACTCTGCAGAGGAAGGAGCTAACACCATCGCGACGTTTACCCAGGTGCCC
AACGAAACGGTGTATTCGTACATCCTCCGTCTTCGTACAGCACTATCTCG
TTTTGAAGCCGCAGTAGACCAGGCTCAAGGACAACGATACCGCTTGGAAC
TGCATGATAGTTGCTTCATGGCAAAACGGGCTTATCCCTGCAATCTGTAT
GTTGCAGTTGACAGACCCAAACCACGTCAAATCGTTGAAAGAGGCGGTCG
CTAGTGCTCGTAAGCATGAAGCTATCGGTCTCGCAGGCACCCACGTGAGC
GCCGTGTCGTCTAATAACACTCCGCCCAACATCATCGCGTCTGATGCCGT
TCGTCAGCCACAACGGCAGCCTGAAAACACCGCCACCCCGCGCCGGACCA
CTACGTTCGGCAATCAAGGGCAATAGAAATGGTGGAGGAAGGAAAACCAA
GCTGGGCACAGCGGAGACCGGCGGCAGTCGGGGATATCATAGCCCCGGCA
ACCGTTACAGCCACCATTGGACGTACGCAGGATGTCGGCAACACACGCAC
GACATCGAGCACTGCTTCGCAAGGCAACGCGCGGAGAAGCAGAAGGCGAA
GAAAGGGTCCGGGGCGGAGAAGAAGAAGGGTGGAGGGAAGAAAACTAAGC
GTCTTCGCCGTGGAGGAGGCGAAGCAGGCATCGAGTAGGGGCGCCCAGGT
GGCGTGCCCGAGCCACTTGGGATTAAATCTACTGATACCGTTAATATTAG
TAGTAGGGGGGTAAGAAGATCCCGTGATCACTTTACGTCGCATAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1052608..1053402+

>mRNA_P-fluviatile_contig1.69.1 ID=mRNA_P-fluviatile_contig1.69.1|Name=mRNA_P-fluviatile_contig1.69.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig1:1052608..1053402+ (Porterinema fluviatile SAG_2381)
ATGGTGGAGGAAGGAAAACCAAGCTGGGCACAGCGGAGACCGGCGGCAGT
CGGGGATATCATAGCCCCGGCAACCGTTACAGCCACCATTGGACGTACGC
AGGATGTCGGCAACACACGCACGACATCGAGCACTGCTTCGCAAGGCAAC
GCGCGGAGAAGCAGAAGGCGAAGAAAGGGTCCGGGGCGGAGAAGAAGAAG
GGTGGAGGGAAGAAAACTAAGCGTCTTCGCCGTGGAGGAGGCGAAGCAGG
CATCGAGTAGGGGCGCCCAGGTGGCGTGCCCGAGCCACTTGGGATTAAAT
CTACTGATACCGTTAATATTAGTAGTAGGGGGGTAAATGGTGGAGGAAGG
AAAACCAAGCTGGGCACAGCGGAGACCGGCGGCAGTCGGGGATATCATAG
CCCCGGCAACCGTTACAGCCACCATTGGACGTACGCAGGATGTCGGCAAC
ACACGCACGACATCGAGCACTGCTTCGCAAGGCAACGCGCGGAGAAGCAG
AAGGCGAAGAAAGGGTCCGGGGCGGAGAAGAAGAAGGGTGGAGGGAAGAA
AACTAAGCGTCTTCGCCGTGGAGGAGGCGAAGCAGGCATCGAGTAGGGGC
GCCCAGGTGGCGTGCCCGAGCCACTTGGGATTAAATCTACTGATACCGTT
AATATTAGTAGTAGGGGGGTAA
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