mRNA_P-fluviatile_contig1.2.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.2.1
Unique NamemRNA_P-fluviatile_contig1.2.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:30326..31583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size639
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.2.1prot_P-fluviatile_contig1.2.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 31143..31583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815256.367193-UTR-P-fluviatile_contig1:30325..304521622815256.367193-UTR-P-fluviatile_contig1:30325..30452Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 30326..30452 +
1693561196.1229656-UTR-P-fluviatile_contig1:30325..304521693561196.1229656-UTR-P-fluviatile_contig1:30325..30452Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 30326..30452 +
1622815257.1159585-UTR-P-fluviatile_contig1:31059..311421622815257.1159585-UTR-P-fluviatile_contig1:31059..31142Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 31060..31142 +
1693561211.676668-UTR-P-fluviatile_contig1:31059..311421693561211.676668-UTR-P-fluviatile_contig1:31059..31142Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 31060..31142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.4211438-CDS-P-fluviatile_contig1:31142..312921622815257.4211438-CDS-P-fluviatile_contig1:31142..31292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 31143..31292 +
1693561227.1409993-CDS-P-fluviatile_contig1:31142..312921693561227.1409993-CDS-P-fluviatile_contig1:31142..31292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 31143..31292 +
1622815257.432151-CDS-P-fluviatile_contig1:31304..315831622815257.432151-CDS-P-fluviatile_contig1:31304..31583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 31305..31583 +
1693561228.1873639-CDS-P-fluviatile_contig1:31304..315831693561228.1873639-CDS-P-fluviatile_contig1:31304..31583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 31305..31583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.2.1

>prot_P-fluviatile_contig1.2.1 ID=prot_P-fluviatile_contig1.2.1|Name=mRNA_P-fluviatile_contig1.2.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MRRATTDDAFARWETLGPPARGTGGTATSCEALSPPTSFRSQAAGAPLEG
AAAAAASGVSRPNQQRSTPQPQDSSSVSGRSASSLGDSRSKSRAPAPAPP
RGPVFAPRGGGDVDLDDGSPARAPVTASTEQFPSSIVEVVGVG
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mRNA from alignment at P-fluviatile_contig1:30326..31583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.2.1 ID=mRNA_P-fluviatile_contig1.2.1|Name=mRNA_P-fluviatile_contig1.2.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1258bp|location=Sequence derived from alignment at P-fluviatile_contig1:30326..31583+ (Porterinema fluviatile SAG_2381)
GCTGTGCTAGCGCGCTCCGCTCCTGCCCTGCACCGTTCCTTCCGCTGACT
TTCCATATTTTTCCAGCTCGTAGAATTCGGCGCTCGGGGCGAGGACTCTC
TGGTAGCTCTTGTTGTATCTTGTACAGGTGAGGAGAGATGTTTTCAAGAA
TGACATCCGATGGCGGCGTGGTTTGGAGAGACTGCAATCCTAATCCCAAG
TCTGTTTAAGCTGCTTCGTCTTCCACCCAATCTCTGTGCCCCATGGATCT
GGCCAGCTACAGATATATCCCAATGCTCATTCGTCGCAGCGCGCTCCCTG
TGTGGTTGTCATTCCAAGCTCTGCTGTGTGTGCGACGTTGCTCGACAAAG
AAAAAAAACAACGACACCAGTCACACACAGACGCGCGCGTTCTCGGGCGT
CCCTCACGAGTCCGCACGTGGTGCCCTCTCTCGGCACACAGAGGATGCCT
ATCTTTGGATACCATCATACGCAGTAGGCGCCCGCTTGAACAGACGCTGC
TCTCCTTTTTGCGATTCCAGTAGATGAATGTGGCCTTTGAAAATTGTCTG
TCCCTTGTTTTGCACAGCAACTGCGACTAGCGAGGGCTCTGGCGGCGGAG
GAGTGGTTCGCTGTCCCATCGAAGAGCGATAAGGTTTTCCGCGTAACCGT
GGGATGAACGCACCCGTATCTGCACCCAAACCCGCTGTCTGTTCGGCCCG
CTCCTTCCCTGTTGGCGACCTGCTGAAACATCAGTTTTTGACGTCGCACG
CTCTTGCGAGTTTCCAAACGGGCGCCTGCCTGCGCGCGCTTCGCTCAGGC
AGGGGACGCCATCGCGCATGCGCCGTGCGACTACCGACGACGCGTTCGCT
AGATGGGAGACGCTCGGGCCTCCCGCACGCGGCACTGGCGGTACGGCAAC
CTCGTGCGAGGCACTTTCGCCGCCCACTTCTTTCCGCTCCCAGGCTGCCG
GCGCCCCCTTGGAAGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCG
GGCGTATCACGACCAAACCAGCAGCGCAGTACACCACAGCCGCAAGACAG
CAGCAGCGTCAGCGGCAGGTCCGCGTCGTCATTGGGCGACAGCCGATCGA
AGTCTCGCGCGCCGGCTCCGGCTCCGCCGCGTGGACCCGTATTCGCCCCC
AGGGGCGGTGGCGACGTGGACCTTGACGACGGCAGCCCGGCGAGGGCCCC
TGTCACCGCTTCGACGGAACAGTTTCCGTCATCTATCGTCGAAGTTGTCG
GCGTCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:30326..31583+

>mRNA_P-fluviatile_contig1.2.1 ID=mRNA_P-fluviatile_contig1.2.1|Name=mRNA_P-fluviatile_contig1.2.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig1:30326..31583+ (Porterinema fluviatile SAG_2381)
ATGCGCCGTGCGACTACCGACGACGCGTTCGCTAGATGGGAGACGCTCGG
GCCTCCCGCACGCGGCACTGGCGGTACGGCAACCTCGTGCGAGGCACTTT
CGCCGCCCACTTCTTTCCGCTCCCAGGCTGCCGGCGCCCCCTTGGAAGGA
ATGCGCCGTGCGACTACCGACGACGCGTTCGCTAGATGGGAGACGCTCGG
GCCTCCCGCACGCGGCACTGGCGGTACGGCAACCTCGTGCGAGGCACTTT
CGCCGCCCACTTCTTTCCGCTCCCAGGCTGCCGGCGCCCCCTTGGAAGGA
GCGGCGGCGGCGGCGGCCTCGGGCGTATCACGACCAAACCAGCAGCGCAG
TACACCACAGCCGCAAGACAGCAGCAGCGTCAGCGGCAGGTCCGCGTCGT
CATTGGGCGACAGCCGATCGAAGTCTCGCGCGCCGGCTCCGGCTCCGCCG
CGTGGACCCGTATTCGCCCCCAGGGGCGGTGGCGACGTGGACCTTGACGA
CGGCAGCCCGGCGAGGGCCCCTGTCACCGCTTCGACGGAACAGTTTCCGT
CATCTATCGTCGAAGTTGTCGGCGTCGGGGCGGCGGCGGCGGCGGCCTCG
GGCGTATCACGACCAAACCAGCAGCGCAGTACACCACAGCCGCAAGACAG
CAGCAGCGTCAGCGGCAGGTCCGCGTCGTCATTGGGCGACAGCCGATCGA
AGTCTCGCGCGCCGGCTCCGGCTCCGCCGCGTGGACCCGTATTCGCCCCC
AGGGGCGGTGGCGACGTGGACCTTGACGACGGCAGCCCGGCGAGGGCCCC
TGTCACCGCTTCGACGGAACAGTTTCCGTCATCTATCGTCGAAGTTGTCG
GCGTCGGG
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