prot_P-fluviatile_contig9.15347.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig9.15347.1
Unique Nameprot_P-fluviatile_contig9.15347.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length360
Homology
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 3.100e-70
Identity = 157/348 (45.11%), Postives = 181/348 (52.01%), Query Frame = 0
Query:    1 MVVLRASLLGDIATLRFPAICGGHRGNRSEEDLEEREGFAHILAQSFGKV---CEVRHFPMMIKRGSRVLAEMSHAKYFNQDSRCPPPLIAQAFYLARIDERLELTVGRVTFPSALTTAALSLPLPRKRRLDA-----EQPRLPRQQDHHPHGGAADDN--------AGGAMTGCDIGVGDDVAADVNVSHIRGGTDADVLVDGDDAPSLSGEEAWRYCCNRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVMGVGG-GDSWAHMKTVTRLMPDVAKCLLVCGVRYRDSEQAESKKPLASQPADNLSLAALAQAEVTALRFSRARLPDG 331
            MV+LRA LLGD+A L FP      R         + +G  +IL +SFGKV   C  R  P +             A   +   RC    + +AFYLA +DE L L V R      + TA ++LP              E P L    D H                 +G    GC  G                             P LS EEAWRYCCNRRPDFPAMFAVYRHFR R +TV TGHKYGAH+VLYEG PDECHSRYCV+V G GG GDSW+H+KT+TRLMPDVAK LLVCGV YR   Q  + +   S P D  SLAALA AEVTALRFSR+R  DG
Sbjct:    1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXXPAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANL--VVPTAPIALPXXXXXXXXXXXXXEEPPGL--LHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXX----------------PLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRP--QGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326          
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR)

HSP 1 Score: 67.0 bits (162), Expect = 9.380e-9
Identity = 37/112 (33.04%), Postives = 55/112 (49.11%), Query Frame = 0
Query:  185 LVDGDDAPSLSGEEAWRYCCNRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVMGVGGGD----------SWAHMKTVTRLMPDVAKCLLVCGV 286
            L+  +D   L   E W+  C  RP+FPA + VY HFR + + V TG KYG  ++LY+  P   H+ + V V    G +          SW  +  + RL  +  K +L+C V
Sbjct:  164 LIVQEDGKDLELLELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275          
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: A0A7S2B910_9STRA (tRNA-intron lyase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B910_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-8
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0
Query:  189 DDAPSLSGEEAWRYCCNRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVMGVGGG-DSWAHMKTVTRLMPDVAKCLLVCGVRYRD 290
            D A   S EE   +    R D   +   Y HF    Y V  G  +G H +LY G P++ HS Y V+VMG+      W ++K +TRLM DV+K L++  +   D
Sbjct:  111 DGAVVASAEELLAFYRQPREDMVRLCLAYAHFLREGYVVKRGLSFGVHLLLYRGSPEDVHSDYGVWVMGLTSSFGRWHNVKVLTRLMQDVSKKLVLSSIEQED 213          
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 61.6 bits (148), Expect = 6.360e-7
Identity = 34/87 (39.08%), Postives = 43/87 (49.43%), Query Frame = 0
Query:  209 DFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVMGVGGGDSWAHMKTVTRLMPDVAKCLLVCGVRYRDSEQAE 295
            +F      Y   RAR   V TG KYG HF +YEG PDECH+RY V+ +       W  +    RL   V K +L C  R  D E+ +
Sbjct:  258 EFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIAMWPEISRTVRLSGGVRKEILFC--RIGDGEKID 342          
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 6.000e-6
Identity = 31/78 (39.74%), Postives = 38/78 (48.72%), Query Frame = 0
Query:  209 DFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVMGVGGGDSWAHMKTVTRLMPDVAKCLLVCGV 286
            +F      Y   R+R   V TG KYG HF +YEG PDECH+RY V+         W  +    RL   V K +L C V
Sbjct:  257 EFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQDSKVAMWPEISRTVRLSGGVRKEILFCRV 334          
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Match: A0A482UN53_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UN53_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 9.580e-5
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 0
Query:  168 AADVNVSHIRGGTDADVLVDGDDAPSLSGEEAWRYCCNRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSRYCVYVM 256
            A +   SH     D+    DG +  +L+ ++ W   C R  +FPA +AVYRH+R   + V  G  +G  FVLY   P   H+ +C+ VM
Sbjct:   56 AGEAAASHRARAADSAASDDGTEH-ALTADQLWSIFCARIANFPARYAVYRHYRTAGWVVRDGLAFGCDFVLYAKGPGWDHAPHCITVM 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LLV6_ECTSI3.100e-7045.11tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A2R5LL66_9ACAR9.380e-933.04tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
A0A7S2B910_9STRA1.490e-835.92tRNA-intron lyase n=1 Tax=Florenciella parvula Tax... [more]
M4YIW8_THEXX6.360e-739.08tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
A0A0W7TI51_9ARCH6.000e-639.74Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
A0A482UN53_9ARCH9.580e-534.83tRNA_int_endo domain-containing protein (Fragment)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 209..298
e-value: 2.9E-17
score: 64.5
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 212..287
e-value: 6.7E-17
score: 61.3
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 188..319
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 208..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:3161776..3164423 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15347.1mRNA_P-fluviatile_contig9.15347.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig9 3161341..3164423 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig9.15347.1 ID=prot_P-fluviatile_contig9.15347.1|Name=mRNA_P-fluviatile_contig9.15347.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=360bp
MVVLRASLLGDIATLRFPAICGGHRGNRSEEDLEEREGFAHILAQSFGKV
CEVRHFPMMIKRGSRVLAEMSHAKYFNQDSRCPPPLIAQAFYLARIDERL
ELTVGRVTFPSALTTAALSLPLPRKRRLDAEQPRLPRQQDHHPHGGAADD
NAGGAMTGCDIGVGDDVAADVNVSHIRGGTDADVLVDGDDAPSLSGEEAW
RYCCNRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGHPDECHSR
YCVYVMGVGGGDSWAHMKTVTRLMPDVAKCLLVCGVRYRDSEQAESKKPL
ASQPADNLSLAALAQAEVTALRFSRARLPDGAGGRTSATTSDTKALPTAA
KPGKGKRKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf