prot_P-fluviatile_contig9.15301.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig9.15301.1
Unique Name	prot_P-fluviatile_contig9.15301.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	194

Homology

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 1.550e-111
Identity = 175/198 (88.38%), Postives = 179/198 (90.40%), Query Frame = 0

Query:    1 MTEMFDFGWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGMGGLAIAEMAGQLAPQGAAAGAGDYXXXXXXXXX-----RAYKRPRVDWDARDRR 193
            MTEM DFGWSERPYWDRKNWSSLE+YKEALK SSTLYVGNLSFYTQESQIYALF+QVG VRRVIMGLDR+KKSPCGFCFVEYT HSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQ VRDEARATNDPARGGMGGLA+AEM GQLAPQG   G GDY   XXXXXX     RA KRPRVDWDARDRR
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQ-VRDEARATNDPARGGMGGLALAEMNGQLAPQGGGGG-GDYYGHXXXXXXXXXXXRANKRPRVDWDARDRR 196

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.320e-47
Identity = 81/138 (58.70%), Postives = 102/138 (73.91%), Query Frame = 0

Query:   10 SERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGMG 145
            ++R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L GT LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   19 NQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.430e-47
Identity = 81/137 (59.12%), Postives = 101/137 (73.72%), Query Frame = 0

Query:   11 ERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATN--DPARGGMG 145
            +R YWDRK + SLE  + A+K SSTLY+GNLSFYT E+Q+  LF +VG ++RVIMGLDR KK+PCGFCFVEY  H++ L     L GT LD R+I+  +D GF QGRQ+GRG SGGQ VRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQ-VRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A067BW87_SAPPC (Nuclear cap-binding protein subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW87_SAPPC)

HSP 1 Score: 161 bits (408), Expect = 1.960e-46
Identity = 81/140 (57.86%), Postives = 103/140 (73.57%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            + GT LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYTSLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRLKKTPCGFCFVEYFNKEHAQACSNFVSGTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 159 bits (403), Expect = 8.080e-46
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G  ++ YWDR+ ++SLE  +EA+K SSTLYVGNLSF+T E+QIY LF  VGPVR VIMGLDR+KK+PCGFCFVEY            +  T LD+R+I+  +D GF++GRQYGRG +GGQ VRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQ-VRDDRRSKDDYDPGRGGYG 150

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 159 bits (401), Expect = 1.920e-45
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G  +R YWDRK ++S E  + A+ +S+TLY+GNLSF+T E QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQ+GRG SGGQ VRD+ R+ +D  P RGG G
Sbjct:   18 GQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQ-VRDDRRSRDDYDPGRGGYG 156

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A225UYF8_9STRA (Nuclear cap-binding protein subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A225UYF8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.330e-45
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G S+R YWDRK +SS    + A+  SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+ HS+       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFSSFAEQQRAMTRSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHSEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A0N7L479_PLAHL (Nuclear cap-binding protein subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L479_PLAHL)

HSP 1 Score: 157 bits (398), Expect = 6.650e-45
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G S+R YWDRK +SS +  + +++ SSTLYVGNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+K+ +       L  T LD R+++  +D GF++GRQYGRG+SGGQ VRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTYSSFDEQQRSIERSSTLYVGNLSFFTSEAQIYELFSRVGYVKRVIMGLDRFKKTPCGFCFVEYSKNVEAKACAQFLSETKLDNRVVRCEMDGGFREGRQYGRGLSGGQ-VRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: A0A484EHH4_BRELC (Nuclear cap-binding protein subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHH4_BRELC)

HSP 1 Score: 157 bits (396), Expect = 8.420e-45
Identity = 78/140 (55.71%), Postives = 104/140 (74.29%), Query Frame = 0

Query:    8 GWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATND--PARGGMG 145
            G S+R YWDRK ++S    + A++ SSTLY+GNLSF+T E+QIY LF +VG V+RVIMGLDR KK+PCGFCFVEY+KH++       L  T LD R+++  +D GF++GRQ+GRG+SGGQ VRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFTSFAEQQRAMEQSSTLYIGNLSFFTSEAQIYELFSRVGFVKRVIMGLDRFKKTPCGFCFVEYSKHTEADACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQ-VRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Match: B6JXD6_SCHJY (Nuclear cap-binding protein subunit 2 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JXD6_SCHJY)

HSP 1 Score: 155 bits (392), Expect = 1.000e-44
Identity = 78/133 (58.65%), Postives = 96/133 (72.18%), Query Frame = 0

Query:   13 PYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQIYALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGMG 145
            PY  R  WS+  +  E +K S  +YVGNLSFYT E QIYALF + G ++R+IMG+DR  K+PCGFCFVEY  H D L ++  + GTALDERII+  +DPG+++GRQYGRG SGGQ VRDE R   DP RGG G
Sbjct:   12 PYILRNGWSN-PAILEKVKESCCVYVGNLSFYTTEDQIYALFSKCGEIKRIIMGIDRFTKTPCGFCFVEYYTHEDALDSLKYVSGTALDERIIRADLDPGYEEGRQYGRGASGGQ-VRDEIREEFDPGRGGYG 142

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig9.15301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LI70_ECTSI	1.550e-111	88.38	Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto...	[more]
F0WMQ1_9STRA	1.320e-47	58.70	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A024GN20_9STRA	2.430e-47	59.12	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A067BW87_SAPPC	1.960e-46	57.86	Nuclear cap-binding protein subunit 2 n=2 Tax=Sapr...	[more]
A0A1W0A133_9STRA	8.080e-46	57.14	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]
A0A8K1CR96_PYTOL	1.920e-45	55.71	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A225UYF8_9STRA	4.330e-45	57.14	Nuclear cap-binding protein subunit 2 n=2 Tax=Pero...	[more]
A0A0N7L479_PLAHL	6.650e-45	56.43	Nuclear cap-binding protein subunit 2 n=1 Tax=Plas...	[more]
A0A484EHH4_BRELC	8.420e-45	55.71	Nuclear cap-binding protein subunit 2 n=1 Tax=Brem...	[more]
B6JXD6_SCHJY	1.000e-44	58.65	Nuclear cap-binding protein subunit 2 n=1 Tax=Schi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 5.1E-19 score: 79.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 2.6E-15 score: 56.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 14.112
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..120 e-value: 5.1E-23 score: 83.4
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 12..153
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 24..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig9	contig	P-fluviatile_contig9:2742404..2744574 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig9.15301.1	mRNA_P-fluviatile_contig9.15301.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig9 2742290..2744574 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig9.15301.1 ID=prot_P-fluviatile_contig9.15301.1|Name=mRNA_P-fluviatile_contig9.15301.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=194bp
MTEMFDFGWSERPYWDRKNWSSLESYKEALKTSSTLYVGNLSFYTQESQI
YALFEQVGPVRRVIMGLDRMKKSPCGFCFVEYTKHSDTLMAITCLDGTAL
DERIIKVGIDPGFKQGRQYGRGMSGGQQVRDEARATNDPARGGMGGLAIA
EMAGQLAPQGAAAGAGDYYGGGGGGGGRAYKRPRVDWDARDRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR035979	RBD_domain_sf