prot_P-fluviatile_contig9.15292.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig9.15292.1
Unique Nameprot_P-fluviatile_contig9.15292.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length120
Homology
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.540e-57
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMSGRG 93
            PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAM GRG
Sbjct:    3 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRG 95          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.380e-41
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMSG 91
            PLSLL+TAQ  PMLVELKNGDTYNGRLD CD+WMNIKL+DVI+TSRD D+F K+ EVYVRG SIKY+TIP+EVL+MV EE+  KEKRA +G
Sbjct:    3 PLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.850e-40
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMS--GRG 93
            PLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R  S  GRG
Sbjct:   17 PLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQETRNASRGGRG 111          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.180e-40
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 87
            PLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R
Sbjct:   16 PLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQESR 102          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.040e-39
Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK 86
            PLSLLKTAQG PMLVELKNGDTYNGRL +CD+WMNI L+DVI TSRD D+F K+ E YVRGNSIKY+ +PEEV+DMV EEDL +E+
Sbjct:    3 PLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.320e-38
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR-AMSGRG 93
            PLSLLKTAQG PMLVELKNGDTYNGRL +CDSWMNI L++VI TSRD D+F ++ E Y+RGNSIKY+ IP+EV+DMV EE + KE R A  GRG
Sbjct:    3 PLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRGRG 96          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: H3G5G4_PHYRM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 134 bits (337), Expect = 2.150e-38
Identity = 63/94 (67.02%), Postives = 79/94 (84.04%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMSGRG 93
            PLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EEDL++ +++A  GRG
Sbjct:    2 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNRRDRQANRGRG 95          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: G4ZVC6_PHYSP (U6 snRNA-associated Sm-like protein LSm4 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZVC6_PHYSP)

HSP 1 Score: 135 bits (339), Expect = 3.060e-38
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMSGRG 93
            PLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK +++A  GRG
Sbjct:    5 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQANRGRG 98          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A7S2W2A9_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A9_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.430e-38
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRA--MSGRG 93
            PLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI LK+VI TSRD D+F K+ E Y+RGNSIKY+ IPEEV+DMV E++   +K +   +GRG
Sbjct:   11 PLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLKEVICTSRDGDRFWKLAECYIRGNSIKYLRIPEEVIDMVPEDNFKADKHSGRHAGRG 105          
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 9.250e-38
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 0
Query:    1 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 87
            PLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK  R
Sbjct:    3 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDR 89          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J7_ECTSI1.540e-5798.92U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E... [more]
A0A836C9X5_9STRA5.380e-4175.82U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T... [more]
A0A7S2E5C6_9STRA3.850e-4072.63U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2FS84_9STRA6.180e-4074.71U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
W7TE23_9STRA5.040e-3975.58U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A7S2UV99_9STRA1.320e-3871.28U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
H3G5G4_PHYRM2.150e-3867.02U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
G4ZVC6_PHYSP3.060e-3868.09U6 snRNA-associated Sm-like protein LSm4 n=7 Tax=P... [more]
A0A7S2W2A9_9STRA4.430e-3869.47U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=R... [more]
A0A6A3LNI3_9STRA9.250e-3870.11U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..69
e-value: 3.9E-17
score: 72.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..68
e-value: 4.5E-17
score: 61.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..81
e-value: 2.6E-31
score: 108.9
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 1..115
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..115
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:2645882..2647019 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15292.1mRNA_P-fluviatile_contig9.15292.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig9 2645880..2647019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig9.15292.1 ID=prot_P-fluviatile_contig9.15292.1|Name=mRNA_P-fluviatile_contig9.15292.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADK
FVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMSGRGRGGRGRG
GRDGARGGGGRGRSDGRGGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf