prot_P-fluviatile_contig80.14749.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig80.14749.1
Unique Nameprot_P-fluviatile_contig80.14749.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length532
Homology
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: D7FPX0_ECTSI (RNA polymerase sigma factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX0_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.390e-146
Identity = 301/566 (53.18%), Postives = 355/566 (62.72%), Query Frame = 0
Query:    5 ARRRR--RVTSNSSPLLTRAFGAACLASATSLSAAFTVTSGLLCGGLCGVTSSP-------AAVSSTG---------GGLAAAIELRQRHGLEIESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVAGPTIAS-------GERCERSPRRKPSLTFDEERALLAKIKEAHLLREVRERLELAATAANAKGNKAA---GRNGGGSVVAQIAVSAEAWAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPASALKELHRARREITDELGRRPSEVELANFFVNGVVA-DDSFPLSSESASASAGLTSAGQ--------VSPRRSRAVVGGEFSAKGSADNRDAQQQARIRRRRINLLSAVQRVTSIDRLMRASDGSTMVPLVDTLV---EEGDQLSQLSQQRRWNGGDEFSELLPRVLTPLQADLVRMACGLADGRPMSMSECSKELSLSVARTKSLFEGSLEKLRSAAAAENPRRLVRQ 530
            ARRRR  R + N+ P LTRA G ACLA ATSLSA F   +G   GG  G+ S+          V   G         GG    I LR+ H   + +                                            P A  T A        G R     RR P+LT +EERALLAKIK A  LR+++  LE AA  A  +G K A   GR+  G   A  AV+  AWAREAG+EV+DL RVLQEG++AK+TLVERNMPMV  +V  QYRWRLRGGQ+S ADL+QEGAYALG+AAERFDP M NRF+T+ALY VRDKLDVALARGNSAISVPA+ALKE+HRARRE+T  LGR PSE ELANFF NGVV   D+ P +S   +   G+   G                AV  GEF+ K ++ +R+A+QQAR RRRR+NLLSAVQ+VTSIDRL+RASDGSTMVPLVDTLV   E+G        Q R  GGD  +ELLPRVLTP QA LVRMACGL+DG+PM+M+ECSKELSLSVARTKSLF+ SL+KLR+AA A++  RLVRQ
Sbjct:    5 ARRRRPTRPSPNTCPFLTRALGVACLAGATSLSAGFVTPAGCR-GGFYGINSAAXXXXXXATTVRQRGSVGGSKNPVGGRDGPIRLRRNHLAMVSA----------------------------------------TAEPPAATATDADAWAGATRGRRARGGARRTPALTTEEERALLAKIKNARTLRDIQRGLEAAAATAAGRGEKGALGDGRSADGG--AGTAVTMGAWAREAGVEVEDLPRVLQEGIEAKQTLVERNMPMVIRMVEGQYRWRLRGGQVSFADLLQEGAYALGVAAERFDPTMPNRFLTYALYTVRDKLDVALARGNSAISVPATALKEVHRARRELTGRLGRTPSEAELANFFANGVVVVGDAEPAAS---AGDGGIRRGGADXXXXXXXXXXXXXXAVTDGEFAVKAASSDREARQQARTRRRRLNLLSAVQKVTSIDRLIRASDGSTMVPLVDTLVGDLEDG--------QPRSAGGD-IAELLPRVLTPRQASLVRMACGLSDGKPMTMAECSKELSLSVARTKSLFDSSLQKLRAAAEADDLGRLVRQ 515          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A1E7F5Q4_9STRA (Sigma2 domain of RNA polymerase sigma factor (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5Q4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.810e-17
Identity = 65/205 (31.71%), Postives = 106/205 (51.71%), Query Frame = 0
Query:  149 LTFDEERALLAKIKEAHLLREVRERLELAATAANAKGNKAAGRNGGGSVVAQIAVSAEAWAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLR--------GGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPA---SALKELHRARREITDELGRRPSEVELANF 342
            LT DEER +   I++ H   ++R+ LE                            + E WA+  GLEV  L R++ +G +A+  LV  N  +VT++    Y    +        G  L++ D+IQEG + L  AAERF+P    RF T+A Y +R ++  +++  +  I +PA   + L++L+RAR+E+  E+GR PS+ ELA++
Sbjct:    2 LTHDEEREITYSIRDLHKAVKIRDELE-----------------------DDEFPTEEDWAKACGLEVMVLRRIMSKGQEARTVLVSANAGLVTSIAKRHYHALKQATDAMGGVGTILTLQDMIQEGNFGLMKAAERFEPERGWRFSTYATYWIRQRILRSISDSSRVIRLPAHVTATLQKLNRARKEMAAEIGRVPSDPELAHY 183          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A6I5N2M8_9CYAN (RpoD/SigA family RNA polymerase sigma factor n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5N2M8_9CYAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.660e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0
Query:  208 WAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPASALKELHR---ARREITDELGRRPSEVELA 340
            WA++AGL V+ L +V+Q+G +AKR +VE N+ +V ++     +       L + DLIQEG   L   AE+FDP    RF T+A + +R  +  A+A    AI +P    ++L++   A+R++T  LGR  +  ELA
Sbjct:   62 WAQQAGLSVEALQQVIQQGQRAKRKMVESNLRLVVSIAKKYLK-----SNLEMLDLIQEGTIGLQRGAEKFDPTKGYRFSTYAYWWIRQAMTRAIAEQGRAIRLPIHMSEKLYKIKQAQRQLTQTLGRSATVAELA 192          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A448YV05_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV05_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-14
Identity = 51/146 (34.93%), Postives = 84/146 (57.53%), Query Frame = 0
Query:  208 WAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLR--------GGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPA---SALKELHRARREITDELGRRPSEVELANF 342
            WAR   L+V +L +V+ EG +++  LV  N  +VT++    Y    +        G  L++ D+IQEG   L  AAERF+P    RF T+A Y +R ++  ++   +  I +PA   + L++ ++ARRE+  E+GR PS+ ELA++
Sbjct:  312 WARACDLDVSELRKVMDEGQESRSLLVSANAGLVTSIAKRHYHVLKQMTNAGGGVGTILTLQDMIQEGNLGLMKAAERFEPERGWRFSTYATYWIRQRILQSITDTSRVIRLPAHVTATLQKFNKARREMAAEIGRMPSDAELAHY 457          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A7S2XSD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSD2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-13
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 0
Query:  208 WAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLR---------GGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPA---SALKELHRARREITDELGRRPSEVELAN 341
            WA E    V +L +V+ +G +A+  LV  N  +VT +    Y W L+         G  L++ DLIQEG   L  AAERFDP+   RF T+A + VR ++  ++A  +  I +P    + LK + +AR+E+T ++GR PS  ELA+
Sbjct:   28 WADECDFSVMELRQVMHDGREARSKLVACNAGLVTQIAKRHY-WTLKRSNQDGRGVGTILTMQDLIQEGNLGLMEAAERFDPSKGFRFSTYATWWVRQRVLRSIADYSRVIRLPVHVHTMLKNISKARKEMTKQIGRDPSMPELAH 172          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A6P0ZD32_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZD32_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.640e-13
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 0
Query:  206 EAWAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVP---ASALKELHRARREITDELGRRPSEVELA 340
            E WA+ A LE  +L + + +G  AKR +VE N+ +V +V     +       + + DLIQEG+  +    E+FDP    RF T+A + +R  +  A+A     I +P      L ++ +A+R+++ +LGR PS VELA
Sbjct:   60 EEWAKAAQLEAPELKQAIAKGETAKRKMVEANLRLVVSVAKKYIK-----RNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSMVELA 192          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A1Y1IKU7_KLENI (RNA polymerase sigma factor n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKU7_KLENI)

HSP 1 Score: 83.6 bits (205), Expect = 3.440e-13
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 0
Query:  201 IAVSAEAWAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPA---SALKELHRARREITDELGRRPSEVELANFFVNGV 347
            +  S E WA+ AG+ V+ L R +  G +A++ LVE N+ +V    N+   +      L   DL   G   L +AA+RFDPA+ NRF T+AL  VR  L  A+ R    I  P    + L  L + RRE++ +LGR P+  E+A +   GV
Sbjct:  455 VPASEEQWAKAAGVSVNALGRQIAAGKEARQRLVECNLRLVMFAANSMKHYP---NALPTEDLFLAGIQGLLIAADRFDPALGNRFSTYALPAVRSYLHRAIQRSGVLICAPVKRTTGLVNLDKVRRELSAKLGRLPTLDEIAKYKNVGV 601          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.510e-13
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 0
Query:  208 WAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPASA---LKELHRARREITDELGRRPSEVELA 340
            WA   G++ D L  ++    +AK T++  N+ +  ++     R+R RG  L++ DLIQEG++ L  AAERFDP    +F T+A + ++  +  A+A  +  I +P      L  + RA RE++ ELGR P++ ELA
Sbjct:   68 WAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAK---RYRRRG--LALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELA 198          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: UPI00168778E5 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI00168778E5)

HSP 1 Score: 79.7 bits (195), Expect = 1.370e-12
Identity = 70/312 (22.44%), Postives = 145/312 (46.47%), Query Frame = 0
Query:  214 LEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVPASALKELHRAR---REITDELGRRPSEVELANFFVNGVVADDSFPLSSESASASAGLTSAGQVSPRRSRAVVGGEFSAKGSADNRDAQQQARIRRRRINLLSAVQRVTSIDRLMRASDGSTMVPLVDTLVEEGDQLSQLSQQRRWNGGDEFSELLPRVLTPLQADLVRMACGLADGRPMSMSECSKELSLSVARTKSLFEGSLEKLRSAAAAE 522
            ++V ++++ L++G +AK+ ++E N+ +V ++     ++  RG  L + +LIQEG+  L    E+FDP+   RF T+A + +R  +  ALA     + +P   +++L++ +   RE+T  LGR P++ ELA++                                       G +     S                  L S+ Q   S++ L+   + S +  L++  +    +   +++Q R     +  ++L  VLT  +A+++R+  G   G+P+++++  K+L++S  R + L   +++KLR     E
Sbjct:   77 IDVAEVNQRLEQGQRAKQRMIEANLRLVVSIAR---KYLNRG--LDLLELIQEGSLGLERGVEKFDPSKGFRFSTYAYWWIRQGITRALATQGRMVRLPVHIVEKLNKLKKSLRELTQRLGRGPTQQELADY--------------------------------------TGFDLETLRS------------------LRSSYQAAISLNTLVGDDEKSELGDLLEDKLNASPE-EHVAEQLRVQ---QIEQVLEGVLTEREAEVIRLRYGFDSGKPLTLADVGKQLNVSRERVRQLETTAMKKLRQPEVRE 323          
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Match: K9V823_9CYAN (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Calothrix sp. PCC 6303 TaxID=1170562 RepID=K9V823_9CYAN)

HSP 1 Score: 79.3 bits (194), Expect = 2.930e-12
Identity = 80/311 (25.72%), Postives = 131/311 (42.12%), Query Frame = 0
Query:  209 AREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYRWRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDVALARGNSAISVP---ASALKELHRARREITDELGRRPSEVELANFFVNGVVADDSFPLSSESASASAGLTSAGQVSPRRSRAVVGGEFSAKGSADNRDAQQQARIRRRRINLLSAVQRVTSIDRLMRASDGSTMVPLVDTLVEEGDQLSQLSQQRRWNGGDEFSELLPRVLTPLQADLVRMACGLADGRPMSMSECSKELSLSVARTKSLFEGSLEKLR 516
            A E  L    L   L +G  AKR ++  N+ +V ++     R+  RG  +   DLIQEGA  L  A+E+FDP    +F T+A + +R  +  A+A     I +P      L +L +A+RE+  +LGR PSE+ELA                              ++ P + R                   Q  ++RR+ ++L   V +    +             L+D L+E+ D  S  ++        E  E+L  VLTP + D++ +  GL    P ++ E     +LS  R + +   ++ KLR
Sbjct:  129 AAEFSLTERQLENRLYQGRVAKRKMIRSNLRLVVSIAK---RYLNRG--VPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAESL---------------------------EIPPSQLR-------------------QLQQLRRQSLSLNHRVGKEEDTE-------------LMD-LLEDEDNQSPEAKMNESMMRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLR 374          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPX0_ECTSI1.390e-14653.18RNA polymerase sigma factor n=2 Tax=Ectocarpus Tax... [more]
A0A1E7F5Q4_9STRA7.810e-1731.71Sigma2 domain of RNA polymerase sigma factor (Frag... [more]
A0A6I5N2M8_9CYAN1.660e-1536.76RpoD/SigA family RNA polymerase sigma factor n=1 T... [more]
A0A448YV05_9STRA1.030e-1434.93RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2XSD2_9STRA1.350e-1336.99Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6P0ZD32_9CYAN2.640e-1334.06RNA polymerase sigma factor, RpoD/SigA family n=2 ... [more]
A0A1Y1IKU7_KLENI3.440e-1336.67RNA polymerase sigma factor n=1 Tax=Klebsormidium ... [more]
A0A835ZBY3_9STRA3.510e-1335.29RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI00168778E51.370e-1222.44RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
K9V823_9CYAN2.930e-1225.72RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1810coord: 142..305
e-value: 2.9E-16
score: 62.2
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 204..525
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 18..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..531
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 233..296
e-value: 2.9E-5
score: 23.7
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 144..299
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 466..525

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:380315..381910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14749.1mRNA_P-fluviatile_contig80.14749.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig80 380315..381910 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig80.14749.1 ID=prot_P-fluviatile_contig80.14749.1|Name=mRNA_P-fluviatile_contig80.14749.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=532bp
MKPFARRRRRVTSNSSPLLTRAFGAACLASATSLSAAFTVTSGLLCGGLC
GVTSSPAAVSSTGGGLAAAIELRQRHGLEIESGGGGGGSSPYASSRPRRN
QFALVASAIAEPPTVIAGAGAAAAAAPVAGPTIASGERCERSPRRKPSLT
FDEERALLAKIKEAHLLREVRERLELAATAANAKGNKAAGRNGGGSVVAQ
IAVSAEAWAREAGLEVDDLSRVLQEGVQAKRTLVERNMPMVTNVVNAQYR
WRLRGGQLSVADLIQEGAYALGLAAERFDPAMQNRFITFALYMVRDKLDV
ALARGNSAISVPASALKELHRARREITDELGRRPSEVELANFFVNGVVAD
DSFPLSSESASASAGLTSAGQVSPRRSRAVVGGEFSAKGSADNRDAQQQA
RIRRRRINLLSAVQRVTSIDRLMRASDGSTMVPLVDTLVEEGDQLSQLSQ
QRRWNGGDEFSELLPRVLTPLQADLVRMACGLADGRPMSMSECSKELSLS
VARTKSLFEGSLEKLRSAAAAENPRRLVRQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like