prot_P-fluviatile_contig8.14667.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig8.14667.1
Unique Nameprot_P-fluviatile_contig8.14667.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length229
Homology
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 5.140e-54
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLFQDLS 228
            VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV DIFGD++LGL+LVRGDA+VLMGELD T EETPR +RVSADEIIEAQ+  SAE+RQDAKLDWLFQDLS
Sbjct:   38 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.860e-52
Identity = 88/101 (87.13%), Postives = 94/101 (93.07%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLFQDLS 228
            VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFV DIFGD++LGL+LVRGDA+VLMGELD T EETPR +RVSADEIIEAQ+  SAE RQDAKLDWLFQDLS
Sbjct:  145 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.560e-28
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRF-KRVSADEIIEAQRGTSAEQRQDAKLDWLF 224
            VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGD+ LGL++VRGD +VL+GE+D   E + +  +RVSA+EI+ AQR T  +     K+ W F
Sbjct:   21 VVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQRNTEDK----TKVAWDF 114          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.660e-28
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPR-----FKRVSADEIIEAQRGTSAEQRQDAKLDWLFQD 226
            VVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFVG ++GD+ LGL++VRGD++VL+GE+ +             KRV+ADEI++AQ+ +  +     K++W F D
Sbjct:  134 VVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A8K1FQE7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQE7_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 1.200e-26
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 0
Query:  116 ADRLSIRTIKRQVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLE-ETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLF 224
            A  L +   K  VVLRDGRHLVG +RS+DQ+SNI+LEDT+ERH  G +F D+ LGL ++RGD IVL+GELD   E + P  KR S +E++EA+   +A+     +  W F
Sbjct:   19 ASALRVLAEKILVVLRDGRHLVGYVRSFDQYSNIILEDTYERHVAGGLFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASMEEVLEAEERLNADGASSVREQWGF 128          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 105 bits (261), Expect = 2.510e-25
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLF 224
            +VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GD+ LGL+LVRGDA+VL+GE+D    E    +RVSADEI+E +R    E+   A+ DW F
Sbjct:   22 IVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELER----EKESRARDDWDF 113          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 2.730e-25
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 0
Query:  121 IRTIKRQV--VLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLE-ETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLFQ 225
            I+ + +QV  VLRDGRHLVG +RS+DQ+SNI+LEDT ERH  G +F D+ LGL ++RGD IVL+GELDS  E + P  KRV  +E++EA+   +       +  W F+
Sbjct:   12 IQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 105 bits (261), Expect = 2.810e-25
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLE-ETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLF 224
            VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F D+ LGL ++RGD IVL+GELD   E + P  KR S +EI+EA+   +A+     +  W F
Sbjct:   21 VVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.320e-25
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 0
Query:  128 VVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWLFQD 226
            +VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D+ALGLF+VRGD IVL+GELD   E +        D ++EA+R ++       K++W F++
Sbjct:   31 IVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFEN 124          
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 103 bits (257), Expect = 1.180e-24
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 0
Query:  121 IRTIKRQV--VLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLE-ETPRFKRVSADEIIEAQRGTSAEQRQDAKLDWL 223
            I+ + +QV  VLRDGRHLVG +RS+DQFSNI+LEDT+ERH  G +F D+ LGL ++RG  IVL+GELDS  E + P  KRV  +E++EA+   + E      L +L
Sbjct:   12 IQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL00_ECTSI5.140e-5487.13U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6H5JKJ0_9PHAE2.860e-5287.13U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A7S2XVC4_9STRA2.560e-2858.16U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
A0A835ZG91_9STRA2.660e-2856.73U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
A0A8K1FQE7_PYTOL1.200e-2650.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6V1WH12_HETAK2.510e-2554.64U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
H3GH42_PHYRM2.730e-2550.00U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
K3WSU0_GLOUD2.810e-2554.08U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A7S2CG66_9STRA4.320e-2551.52U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]
A0A0P1A9M0_PLAHL1.180e-2451.89U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 119..184
e-value: 2.0E-11
score: 53.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 127..183
e-value: 2.3E-13
score: 49.6
NoneNo IPR availableGENE3D2.30.30.100coord: 124..222
e-value: 7.5E-26
score: 92.3
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 125..218
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 125..218
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 127..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3674678..3676237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14667.1mRNA_P-fluviatile_contig8.14667.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig8 3673766..3676343 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig8.14667.1 ID=prot_P-fluviatile_contig8.14667.1|Name=mRNA_P-fluviatile_contig8.14667.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=229bp
MDVRYACTHVMLLGASTRLGAKRRACCKLAYRAVISCTSKYLIKQARSSW
QVAMPTEIVQSRNRRDEDTRARSRGNPTIAVCSVSHRGCHKWWGLVPVWP
WVRGCFGPANTYAVRADRLSIRTIKRQVVLRDGRHLVGVMRSYDQFSNIV
LEDTHERHFVGDIFGDVALGLFLVRGDAIVLMGELDSTLEETPRFKRVSA
DEIIEAQRGTSAEQRQDAKLDWLFQDLS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf