prot_P-fluviatile_contig8.14498.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig8.14498.1
Unique Nameprot_P-fluviatile_contig8.14498.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length1173
Homology
BLAST of mRNA_P-fluviatile_contig8.14498.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 7.720e-55
Identity = 304/782 (38.87%), Postives = 354/782 (45.27%), Query Frame = 0
Query:  325 SPRRRACLSPGPVRALGGGSTRRLSTDSRSPRKNEQKYADGRQQAPPAPCPGGNAGSSGGFPSPYGGGTAPLQAATTTAAATANDSVRHRQNLSISPAAQHEDEAWGGGAWLSS-PDELSSPGLPGRRRSSDGRVE----SKAERNDDSEGRGKVSDLAPLARELPAFLAQAVGLSGSLRALASCQAVSREWRDALG--GVRSKELFGSIVRASGVSASLRPAVWQMLVLRAVRVGGKHRRGSSAGGXXXXXXXXXXXXXXXX-----REPFSASSPLSSADAFARLVDAGAAGPHAALIARDVPRAFGAIAPHKRRDNGKAPSTTTITAITGTIINSTKSNYNHDDDSSNAERGTVMTPPRSRTMTPRTDERXXXXXXXXIGGAHDRGGGSGRGPFGGEGLGFFGGAVGGALTNLLGXGWRRDDDEK-DLRVTGTXXXXXXXXXXXXXXXXXXXXXX---------------------------AASGA-VAENSVSSPKERDRGGFKLAS--LSPFGDYNGNSTGGXXXXXXXXXXXXXXXXAPSDRHFGCPDAPTEESGAXXXXXXXXXXXXXXXXXXXDGDGGRLSPNGRRRPARSAVPLANKAITASAAAAAASGKERILPAPAIPSAAPAADEA--------------------------------ARQVEGAATEPGGREVDGDENXXXXXXGDKDAAWLARSEKAWAAVPLESKRECLRNVLLAIAAKFPDVGYCQGMDRLVTMLMMFYFVSPEDTNASSITGAVTPTMVVSMV 1031
            SPRRRA LSPGP R   GG++      SR PR +      G +      C     G  GG     G G A LQAA+       ++S RH  NL +SP    + E  G GA  +     +SSP        SD  V     S++  +  +   G++ DL PLARELPAFL +AVGLSGSLRALA+CQAVSR WRDALG    R K+LFG IVR+SGV ASLRPAVWQMLV RAV  G           XXXXXXXXXXXXXXXX     R+ FS+ S  SS  +FA+LV+ G AGPHAALIARDVPRAFGA+APHKRR++G    +T    IT    NST+        S++A               P     XXXXXXXX                  +GLGFFGGA    LTNLL   WR DDDE    R TGT    XXXXXXXXXXX      X                              GA VA    S  +E   GGF LAS  LSPF     N  GG                     H   P AP   S                     DG G R+         R++ P +++ +T  +                                                           ARQ  G  T                   + DAA L R + AWAAVP+ SKR CL NVLLAIAA+FP VGYCQGMDRL+ MLMM YFV PEDTN +    AV P +    V
Sbjct: 1501 SPRRRASLSPGPTRMQAGGAS------SRDPRPSCLPGQHGNEVGVCNLC-----GRGGGGCGARGRGFAALQAAS-------SESTRH--NLLVSPPMPQQREGGGEGAGAARFAPAISSPLSKTAYGGSDPIVNVGGASRSSGSKPAWDGGRICDLEPLARELPAFLTRAVGLSGSLRALAACQAVSRAWRDALGFGEERGKDLFGGIVRSSGVPASLRPAVWQMLVQRAVAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSICGRDSFSSCSFSSSLSSFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSRST----ITPGNNNSTRRG------SASAXXXXXXXXXXXXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DGLGFFGGA----LTNLLVGNWRHDDDELVGARGTGTPPRRXXXXXXXXXXXASLQGEXXXXXXXXXXXXXXXXPFSWLNPGVSPGTGPGARVAAGGASPSREPAGGGFTLASFPLSPF--RRDNDGGGGKGAARRLPP-----------HSPAPSAPDPSS---------------------DGVGARI---------RASPPRSSRRMTIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQEAGVET---------------AVAAEDDAAVLERLDDAWAAVPVGSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFVPPEDTNTAVGPAAVAPKLTARTV 2188          
BLAST of mRNA_P-fluviatile_contig8.14498.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 9.700e-52
Identity = 325/748 (43.45%), Postives = 365/748 (48.80%), Query Frame = 0
Query:  327 RRRACLSPGPVRALGGGSTRR--LSTDSRSPRKNEQKYADGRQQAPPAPCPGGNAGSSGGFPSPYGG-GTAPLQAATTTAAATANDSVRHRQNLSISPAAQHEDEAWGG-GAWLSSP---DELSSPGLPGRRRSSDGRVESKAERNDDSEGRGKVSDLAPLARELPAFLAQAVGLSGSLRALASCQAVSREWRDALG-GVRS-KELFGSIVRASGVSASLRPAVWQMLVLRAVR----------VGGKHRRGSSAGGXXXXXXXXXXXXXXXXREPFSASSPLSSADAFARLVDAGAAGPHAALIARDVPRAFGAIAPHKRRDNGKAPSTTTITAITGTIINSTKSNYNHDDDSSNAERGTVMTPPRSRTMTPRTDERXXXXXXXXIGGAHDRGGGSGRGPFGGEGLGFFGGAVGGALTNLLGXGWRRDDDEK-DLRVTGTXXXXXXXXXXXXXXXXXXXXXX---------------------------AASGA-VAENSVSSPKERDRGGFKLAS--LSPFGDYNGNSTGGXXXXXXXXXXXXXXXXAPSDRHFGCPDAPTEESGAXXXXXXXXXXXXXXXXXXXDGDGGRLSPNGRRRPARSAVPLANKAITASAAAAAASGKERILPAPAIPSAAPAADEAARQVEGAATEPGGREVDGDENXXXXXXGDKDAAWLARSEKAWAAVPLESKRECLRNVLLAIAAKFPDVGYCQGMDRLVTMLMMFYFVSPEDTNASSITGAVTP 1024
            RRRA LSPGP R   GG++ R  LS+ S  P +NE          P AP P G               G A LQAA+       +DS RH   L +SP    + E   G GA   +P     LS     G     +    S++  +  +   G+V DL PLARELPAFLA+AVGLSGSLRALA+CQAVSR WRDALG G  S KELFG IVR+SGV ASLRPAVWQMLV RAV                        XXXXXXXXXXXX    RE FS+ S  SS  +FA+LV+ G AGPHAALIARDVPRAFGA+APHKRR++G    +T                                  PRS         + XXXXXXX                  +GLGFFGGA    LTNLL   WR DDDE    R TGT        XXXXXXXXXXXXXX                              GA VA    S  +E   GGF LAS  LSPF          XXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXXXX          GRR  + + VP+ +                         +  PA  EA   VE A                     + DAA L R + AWAAVP+ESKR CL NVL AIAA+FP VGYCQGMDRL+ MLMM YFVSPEDTN +    AV P
Sbjct: 1239 RRRASLSPGPTRVQAGGASPRDPLSSCSPGPHRNEH--------VPRAPSPAGXXXXXXXXXXXXXXRGFAALQAAS-------SDSTRH--GLPVSPLMPQQREGGAGAGAGRFAPAVRSPLSKTAYGGGDPIVNVGGASRSSGSKPAWDGGRVCDLEPLARELPAFLARAVGLSGSLRALAACQAVSRAWRDALGFGDESGKELFGGIVRSSGVPASLRPAVWQMLVQRAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIGGRESFSSCSFSSSPSSFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSRSTXXXXXXXXXX---------------XXXXXXXXXPRSTXXXXXXXRQGXXXXXXXXXXXXXXXXXXXXXXXXXDGLGFFGGA----LTNLLVGNWRLDDDELVGARGTGTPPRRRGWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSWLNPGVSPGTGPGARVAAGGASPSREPAGGGFTLASFPLSPFRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTAGRRGWSPTVVPVISXXXXXX-------XXXXXXXXXXXXTTIPARQEAG--VEKAVV------------------AEDDAAVLERLDDAWAAVPVESKRRCLENVLRAIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTAVGPAAVAP 1923          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL00_9PHAE7.720e-5538.87Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7G646_ECTSI9.700e-5243.45Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 971..1007
e-value: 1.7E-7
score: 31.1
NoneNo IPR availableGENE3D1.10.8.270coord: 952..1015
e-value: 3.6E-8
score: 35.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 191..1172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..169
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 170..190
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 969..1006

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2000375..2005190 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14498.1mRNA_P-fluviatile_contig8.14498.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig8 1996738..2005191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig8.14498.1 ID=prot_P-fluviatile_contig8.14498.1|Name=mRNA_P-fluviatile_contig8.14498.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1173bp
MTSTPNGHNARAVASAASSSSSFWTASSGEGDVDDGAPDSAPVNMAGAST
LQRAAGNATGSVVKRHGVSGGGGGGEGVSGNVVAAVPLPEGNEGAAAAVG
PAAAVPRRSFFERSPLAVGSASMTSTSSNNGSSSGDNGRERPARHQAHGV
PRMLSRGVISRAEQRRSKPLVPAAAIAVAAVAAAAAARLGDIAEETKVTR
AGIDAAPAGVSPALEIGLRGRLAKAGSPILRAPVGSGSPPQSPLRYSGSS
PRAHAFPTPDTPRVLPANQHQLTMTTTSGTATPATTKQKPRDLAAPRRSS
EALSSASSPHAADSSAAAAVAPLASPRRRACLSPGPVRALGGGSTRRLST
DSRSPRKNEQKYADGRQQAPPAPCPGGNAGSSGGFPSPYGGGTAPLQAAT
TTAAATANDSVRHRQNLSISPAAQHEDEAWGGGAWLSSPDELSSPGLPGR
RRSSDGRVESKAERNDDSEGRGKVSDLAPLARELPAFLAQAVGLSGSLRA
LASCQAVSREWRDALGGVRSKELFGSIVRASGVSASLRPAVWQMLVLRAV
RVGGKHRRGSSAGGGAGVGVSGSGSGGGGGREPFSASSPLSSADAFARLV
DAGAAGPHAALIARDVPRAFGAIAPHKRRDNGKAPSTTTITAITGTIINS
TKSNYNHDDDSSNAERGTVMTPPRSRTMTPRTDERRNRRRRTTIGGAHDR
GGGSGRGPFGGEGLGFFGGAVGGALTNLLGGGWRRDDDEKDLRVTGTPPP
PRRGGEKALNHRRQASSSRAASGAVAENSVSSPKERDRGGFKLASLSPFG
DYNGNSTGGGGGGGRGTSNPRTPSPAPSDRHFGCPDAPTEESGAAGGGVS
PAASRRRMTSGGGDGDGGRLSPNGRRRPARSAVPLANKAITASAAAAAAS
GKERILPAPAIPSAAPAADEAARQVEGAATEPGGREVDGDENDDDDDGGD
KDAAWLARSEKAWAAVPLESKRECLRNVLLAIAAKFPDVGYCQGMDRLVT
MLMMFYFVSPEDTNASSITGAVTPTMVVSMVSSALPSPKSGGGGGGSGGN
LTLVEEHAATNDFGVPSPASVTSDATLASSALPPAAPATAAAGAVESGEE
GRSCKTASRRPTGVSGHPSPALRISPPPPCRPAEARLLGSACTRSSPGCS
RGSGCTICTCRSGGGFSSALRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf