prot_P-fluviatile_contig79.14255.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig79.14255.1
Unique Nameprot_P-fluviatile_contig79.14255.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length189
Homology
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.650e-70
Identity = 115/140 (82.14%), Postives = 127/140 (90.71%), Query Frame = 0
Query:   49 TSSAKDQKPQEEKEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISLGLSAV 188
            +SSA D+    EKE YTARQA+TGRPVSPHVTIYDFPPAALSSIANRVTG+ALVAGLYGI GATLVGCDA  LMS++GSSG+GPAVKL VSFPLVYHYLGAVRHTVWD +P+TLQTAGVAKTSYAL+G S A+SLGL+AV
Sbjct:   41 SSSASDK----EKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.510e-41
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   64 YTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISL 183
            Y  RQ KTGRPVSPHVT Y FP  A+SSI NRVTG+ LV GLYGIG   LVG D   LM+ +G + + P  K++V+FPL+YHYLGA RHT+WD  P+T+  A VA++SY L GA+  ++L
Sbjct:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.370e-39
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   57 PQEEKEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISLGLS 186
            P EEK  Y+ARQ KTGRPVSPHVTIY FP  A+SSI+ RVTG  L  GL GIG   LVG D P+LMS++GSS +GP  K  VS+ LVYH+ GA RH VWD+ P+ L+   V +TS  ++GA+  IS GL+
Sbjct:   50 PSEEK--YSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLA 177          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.640e-35
Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = 0
Query:   64 YTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGS-SGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISLGLS 186
            Y+  QAK GRP+SPHV IY FPPAAL+SI NRVTG  L  G+ GIG   L G D  S+MS++G  S +G   KL V+FPLVYHYL  +RH  WDR P+ L T  V ++S+ LIG+S AIS+ L+
Sbjct:   31 YSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLA 154          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.070e-35
Identity = 69/123 (56.10%), Postives = 84/123 (68.29%), Query Frame = 0
Query:   61 KEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISL 183
            KE YT RQA+TGRPVSPHVTIY FP  AL+SI+ RVTG  L  GL GI    L G D P LMSS+G+S +G   K+L  FPL++HY   +RH  WD  P+ L   GVA+ SY L+G++ AISL
Sbjct:   45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.070e-35
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 0
Query:   64 YTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISL 183
            Y   Q + GRP+SPHVT Y FP AA+SSI NR+TG+ALV GLYGIG  +LVG DA  +MS +  S L   VKL+V+FPL+YHY  A RHT+WD  P+T++   V K+S  +  A+ ++SL
Sbjct:   15 YDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSL 134          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A6U0SSH4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SSH4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.270e-33
Identity = 71/142 (50.00%), Postives = 87/142 (61.27%), Query Frame = 0
Query:   48 FTSSAKDQKPQEEKEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAV----KLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISLGL 185
             T   KD + + EKE Y+ R  +T RPVSPHVTIY FP  AL+SI NRVTG+AL  G  G+G   LVG    SL      + LGP V    K  V+FP  YHY G +RH +WD+ PD L T+ V+  SYAL+G+S   SLGL
Sbjct:   32 MTIMNKDSRKEYEKENYSERMNQTERPVSPHVTIYAFPITALTSITNRVTGLALSIGAAGLGTVELVGGSGASLALMQDIAALGPIVGGIAKFAVAFPCTYHYFGGLRHLLWDKNPDMLTTSDVSNASYALVGSSTLFSLGL 173          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.570e-32
Identity = 67/128 (52.34%), Postives = 83/128 (64.84%), Query Frame = 0
Query:   61 KEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCD--APSLMSSMGSSG--LGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAISLG 184
            K+ Y+ R A+TGRPVSPH+TIY FP  ALSSI NRVTG+AL  G  G+G   L+G    A  L+  +GSSG  +G   K  V+FP VYHY+GA+RH  WD  P+ L+   V K S AL G+S  IS G
Sbjct:    6 KQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAG 133          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A7S1E301_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E301_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.890e-31
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 0
Query:   61 KEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCD--APSLMSSMGSSGL---GPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAK-TSYALIGASAAIS 182
            K+ Y+ R  KTGRPVSPHVTIY FP  AL+SI  RVTGMA+  G +G+G   LVG    A + M  +G+SG+    PA K  V+FPLVYHYLGAVRH VWD+ PD+  T   AK  SY L+G+S A+S
Sbjct:   31 KQNYSERMNKTGRPVSPHVTIYAFPVTALTSITVRVTGMAMSVGCFGLGAVELVGGSGTAAATMEMIGNSGVLVSAPA-KFCVAFPLVYHYLGAVRHFVWDKYPDSTLTTDHAKMASYGLVGSSLAVS 157          
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Match: A0A1Z5JV10_FISSO (Succinate dehydrogenase (Ubiquinone) cytochrome b560 subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JV10_FISSO)

HSP 1 Score: 120 bits (301), Expect = 3.740e-31
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 0
Query:   64 YTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMALVAGLYGIGGATLVGCDAPSL--MSSMGSSG--LGPAVKLLVSFPLVYHYLGAVRHTVWDRVPDTLQTAGVAKTSYALIGASAAIS 182
            Y+ R  +TGRPVSPHVT+Y FP  ALSSI NRVTG AL  G  G+G   LVG    SL  M ++GS G  +  A K  VSFP+VYHY  A+RH +WD  P+ L+   V ++SY L GASAAIS
Sbjct:   47 YSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAIS 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI1.650e-7082.14SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A835YMP1_9STRA4.510e-4157.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XVJ2_9STRA4.370e-3957.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3MID7_9STRA2.640e-3555.65Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TK90_9STRA4.070e-3556.10Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A836CCH7_9STRA9.070e-3553.33Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A6U0SSH4_9STRA4.270e-3350.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1YU13_9STRA1.570e-3252.34Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1E301_9STRA1.890e-3155.47Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A1Z5JV10_FISSO3.740e-3154.47Succinate dehydrogenase (Ubiquinone) cytochrome b5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 72..183
e-value: 9.3E-14
score: 51.5
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPIRSFPIRSF000178SDH_cyt_b560coord: 17..188
e-value: 1.7E-23
score: 81.2
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 54..188
e-value: 8.8E-30
score: 105.6
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 69..185
NoneNo IPR availablePANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 26..186
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 26..186
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 45..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..188
NoneNo IPR availableTMHMMTMhelixcoord: 129..148
NoneNo IPR availableTMHMMTMhelixcoord: 92..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:168519..173284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14255.1mRNA_P-fluviatile_contig79.14255.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig79 168377..173349 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig79.14255.1 ID=prot_P-fluviatile_contig79.14255.1|Name=mRNA_P-fluviatile_contig79.14255.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=189bp
MMLSRVARTTAVLPSAMMAKARPFALPPQPAVAAAAAATSSGVLSSSFTS
SAKDQKPQEEKEPYTARQAKTGRPVSPHVTIYDFPPAALSSIANRVTGMA
LVAGLYGIGGATLVGCDAPSLMSSMGSSGLGPAVKLLVSFPLVYHYLGAV
RHTVWDRVPDTLQTAGVAKTSYALIGASAAISLGLSAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000701SuccDH_FuR_B_TM-su
IPR014314Succ_DH_cytb556
IPR034804SQR/QFR_C/D