prot_P-fluviatile_contig75.14012.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig75.14012.1
Unique Nameprot_P-fluviatile_contig75.14012.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length145
Homology
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 7.490e-99
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRTA 144
            MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFV+ASTLDL GKPDDGTYKPLGDEV+LADKYEYVMHGRVYRF+ QKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR A
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.400e-60
Identity = 85/141 (60.28%), Postives = 115/141 (81.56%), Query Frame = 0
Query:    2 SGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
            +G+LFED+F+V +LNP GKKFDRVNRL CK VT++MDLLLD N +IY V++ ++L+ V++STL L G PDDGTY+P+  E  LA +YEYVMHGRV+++E    T+VQV ASFGGLLMRLTG+QRH+ +I +D R++ L+R+
Sbjct:    4 TGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.590e-52
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDG-TYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
             LFEDIFEV  LNP+GKKF+RVNRL   G T++ DLLLD NC+IY V EG+++T V+ASTL L G PDD  +++P   E  LAD Y+YVMHGR++   ++KD  V + ASFGGLLMRLTGDQRH++N+  D R++ LL++
Sbjct:    8 TLFEDIFEVTALNPEGKKFERVNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKK 147          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.480e-52
Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
             LFEDIF V +LNPDGKKF R+NR++  G T+  DLLLDTN +IYP+ E E++T V++STL L G+PDDG Y   G E  +AD YEYVMHGRV+  +++ D  + V  SFGGLLMRLTGDQRH+ N+  D R++ L+++
Sbjct:    6 TLFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSG-EPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC)

HSP 1 Score: 169 bits (429), Expect = 1.600e-51
Identity = 84/143 (58.74%), Postives = 104/143 (72.73%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGT-YKPLG---DEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
             LFEDIFE+  LNP+GKKF+RVNRL  KG T+D DLLLD NC IY + E E++T V+ASTL+L G PDD T Y P     +E  LAD YEYVMHGRV+   ++KD  V +  SFGGLL RLTGDQRH++NI  D R+F L+++
Sbjct:    8 TLFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKK 150          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 169 bits (428), Expect = 1.710e-51
Identity = 75/142 (52.82%), Postives = 109/142 (76.76%), Query Frame = 0
Query:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
            M+  LFEDIFEV ++NPDGKKFD+V R+ CKGV+Y+++L LD N ++Y +++ E+ TF + STLDL GKPDDGTY   G +  L D+Y+Y M+G+V++++H+    V ++ASFGGLLM L G+QRH+  I  D+R++CLLR+
Sbjct:    1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSG-KPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A7S1GJQ4_CYCTE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ4_CYCTE)

HSP 1 Score: 168 bits (426), Expect = 4.570e-51
Identity = 81/140 (57.86%), Postives = 104/140 (74.29%), Query Frame = 0
Query:    4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDG-TYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
             LFEDIFEV  LNPDGKKF+RVNRL   G T++ DLLLD NC+IY VK+G+++T V+ASTL L G P D  ++ P   E  LAD YEYVMHGR++   ++KD  V + AS+GGLLMRLTGDQRH++ +  D R+F LL++
Sbjct:   11 TLFEDIFEVTALNPDGKKFERVNRLAATGTTFECDLLLDLNCEIYNVKDGDKITLVLASTLHLDGSPADHFSFDPNATEPTLADNYEYVMHGRIFDVSYKKDGIVVISASYGGLLMRLTGDQRHLSQVLPDMRLFLLLKK 150          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.050e-50
Identity = 74/138 (53.62%), Postives = 106/138 (76.81%), Query Frame = 0
Query:    5 LFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
            +FEDIFE+ +LNP+GKKF+RV RL CKGV+Y+++L+LD N +++P+K  E+ TF + STLDL GKPDDG +   G +  L D+Y+Y M+G+V++++H+    V ++ASFGGLLM L GDQ H+ NI   SRV+CL+RR
Sbjct:    6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTG-KPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A7S1CMR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMR6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.510e-49
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    2 SGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
            S  LF DIF V  +NPDGKKFDRV+RL CKG T+D+ L +D   +++PVK GE+L   V STL L G+PDDGTY+    E +L D+Y+Y MHGRV+++++++D +V V+ASFGGLLM L G Q  ++++ +D RV+CL+RR
Sbjct:    5 SATLFHDIFTVDDVNPDGKKFDRVSRLVCKGETWDVLLKIDVASEVFPVKAGEKLAVAVVSTLRLDGEPDDGTYQHNEGEESLLDQYDYGMHGRVFKYDYEEDDRVSVYASFGGLLMLLHGQQDSLSSLSLDQRVYCLIRR 145          
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Match: A0A7S2W3V0_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W3V0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.860e-49
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 0
Query:    5 LFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVK-EGERLTFVVASTLDLGGKPDDG-TYKPLGDEVNLADKYEYVMHGRVYRFEHQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
            LFEDIFE+  +N DGKKFDRVNR+   G T++ +LLLD NC+IY +K EGE+ T V+ASTL+L G+PDD  +Y P   E  LAD YEYVMHGRV+   ++K+  V + ASFGGLLMRL G QRH++NI+ D R++ LL++
Sbjct:    9 LFEDIFEITAINSDGKKFDRVNRIAATGTTFECELLLDINCEIYHLKDEGEKFTLVLASTLNLDGRPDDHLSYAPNPGEPTLADNYEYVMHGRVFDISYKKEGAVVIAASFGGLLMRLIGHQRHLSNIQPDMRLYVLLKK 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI7.490e-9995.83DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA4.400e-6060.28DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA3.590e-5257.86DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA4.480e-5256.12DNA-directed RNA polymerases I, II, and III subuni... [more]
K0RE90_THAOC1.600e-5158.74DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD1.710e-5152.82DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1GJQ4_CYCTE4.570e-5157.86DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024TMY4_9STRA2.050e-5053.62DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1CMR6_9STRA1.510e-4953.19Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2W3V0_9STRA2.860e-4957.14DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..142
e-value: 2.0E-55
score: 200.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..142
e-value: 5.1E-49
score: 166.0
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..144
e-value: 3.9E-49
score: 164.4
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
NoneNo IPR availableGENE3D2.40.50.140coord: 6..144
e-value: 9.7E-51
score: 173.4
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..142
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:144247..146943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14012.1mRNA_P-fluviatile_contig75.14012.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig75 143108..146943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig75.14012.1 ID=prot_P-fluviatile_contig75.14012.1|Name=mRNA_P-fluviatile_contig75.14012.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=145bp
MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPV
KEGERLTFVVASTLDLGGKPDDGTYKPLGDEVNLADKYEYVMHGRVYRFE
HQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold