prot_P-fluviatile_contig7.13603.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig7.13603.1
Unique Nameprot_P-fluviatile_contig7.13603.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length988
Homology
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BLAST of mRNA_P-fluviatile_contig7.13603.1 vs. uniprot
Match: A0A6H5L565_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.050e-9
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 0 
Query:  894 KTRGVGVKPRVVDLFAVKQPLSTSFER-GGSDSPERWNPESGPLEGVVITG--TGXXXXXXXXXXXXXGAXXXXXXXXXXAVPPPSDFYTKRNRPRR 987
            KTRGVG KPRV +L  VK+P +T     GG+ SPERWNP++GPLEG+VI G  +GXXXXXXXXXXXXX  XXXXXXX        SDFYTKR+RP++
Sbjct: 1645 KTRGVGAKPRVANLAVVKKPSNTDGGGDGGNSSPERWNPDTGPLEGIVIAGRNSGXXXXXXXXXXXXXXXXXXXXXXAGSRAVGASDFYTKRHRPKK 1741
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L565_9PHAE2.050e-963.92C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 721..748
NoneNo IPR availableGENE3D4.10.1000.10coord: 325..357
e-value: 7.2E-7
score: 30.5
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 327..354
e-value: 4.3E-8
score: 42.9
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 329..352
e-value: 2.1E-8
score: 33.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 327..355
score: 15.751
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 329..354

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2369517..2373774 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13603.1mRNA_P-fluviatile_contig7.13603.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig7 2367873..2373805 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig7.13603.1 ID=prot_P-fluviatile_contig7.13603.1|Name=mRNA_P-fluviatile_contig7.13603.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=988bp
MQMGLGDGRGGGGVGVTKRGRNKRNKRGRKGAGNTPAGAGPGGVGGGERD
GARESAERTGSAAAASVSGPGENKTEAPKQAARGGGDGDGDRNKKENGAG
DAGPGANSGGPTPIPSGVGDGDGGGEAAGSGAAAPSTPTDTLAATTTATA
ISPKDGRDTEEASAASPGQGRAVASNDPRPPAGVTQGDADPGEGFHDQPP
QQQQAEDDNYRNGGGGMGGGGVGPPPWHQQGGTGPGGPGGGGGGGGGGGG
MMGIPPSHHQSGQQQQQHQQFQSDFASFPRPTPLMGDGPPFGGRGGWGPG
GGGRGAGEGGGGIGGGGGRGGPGGADLRGTRPCRNFAREGLCPYGDKCLF
SHTLLAERGRSDGGGIRGKYPQQQRQQYGGRGGGHGHQDRNSGNSNTDGM
RRRDDGLSAYGPDAGAGGGGDGCGRHSYAADAVSRAHDSRYPASSRGGGG
DRDSRRGGGDSRGRGGGEEARYHSGRERTNDFLGGGGGGGSGASRAGRHE
KSGGGGDGRDSRYRGGGGVGVRRDRAGSRGSGGDRGSSTGRGIDRVGSSD
RGGRDRGGSRDKVAIRDRDRGDGGGGGSGGGSDARDGGNDDRRAGRRDDR
SGRRSLDPDRQSREAYGRVAGGGSGGGGSTRKDSSRDRGRSRDRKHPSPP
RRTSRNGGEGRERSEAGVGGGGGDGNNGAAGGFRDDRSEERGHRKTGRGR
EEVGGSLEAGGGGGGDENGSRGKKEKKKKDKKEKKDKKEKKVKKKKDEDK
DKRDKQDHHDGEPAGFYPSPPPPSSSMAAVAATQDDTTSSPFRGAGRKRA
RSPPSSGRGRQHHDYDGAGDRNAARSGEIGGDNVGGSGSGGDRFDDGGGS
SAGGRKSKRSKHRRGGGKGDSSGGDGDARDRSQSPPAAIVTGTKTRGVGV
KPRVVDLFAVKQPLSTSFERGGSDSPERWNPESGPLEGVVITGTGGGSGG
KKDKTKTMGAAETASAAARAAVPPPSDFYTKRNRPRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf