prot_P-fluviatile_contig7.13473.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig7.13473.1
Unique Nameprot_P-fluviatile_contig7.13473.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length277
Homology
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BLAST of mRNA_P-fluviatile_contig7.13473.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 4.320e-79
Identity = 155/261 (59.39%), Postives = 173/261 (66.28%), Query Frame = 0 
Query:   17 RGNGVEKRPHPAPTRRSTEAGSSCTCGTSLVSPAAAARPTVGAMGSP-LTQHLSTGGGGGIRGSSSGSSIFLTVLDAEDPGCRAMVPYTASPIRRTPLRNRLALPAPPSLLALPASAE-DIFSPSTSFSASTHISSQAVGGAGARGGIWRSRVDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDAFAPPPDPIKRLYQLQHGSFKAVCRGCR-HGFNTAAPPSISPHTSAQLLMGLMISN 274
            RG GVEKR HPA TR S         GT+     A      G  GS  +  H+S GG    RG   G+SI L  L    PGCRA+VPYTASP R     +RL LPA P LLALP S   D  S  +S S S+  SS +      +GG  R RVDIPLEVFP+ FQYMDA TLC+VSSVSREW+KQGNDDQYWR LCRARFNV PDAFAPPPDPIKRLYQLQHGSFKA+CRG R HG ++ APP I  HTSAQLL+GL+ SN
Sbjct:   16 RGTGVEKRWHPASTRHSGP-------GTTPYRREAVDDSDAGGEGSTKIFSHISKGGRFSDRGEREGTSIVL--LPEAGPGCRALVPYTASPAR-----SRLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAAR-RVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRRHGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI4.320e-7959.39F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 169..209
e-value: 9.5E-4
score: 28.5
IPR001810F-box domainPFAMPF12937F-box-likecoord: 168..211
e-value: 3.4E-7
score: 30.0
IPR001810F-box domainPROSITEPS50181FBOXcoord: 163..209
score: 11.167
NoneNo IPR availableGENE3D1.20.1280.50coord: 166..248
e-value: 1.7E-10
score: 42.7
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 168..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:453785..458093 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13473.1mRNA_P-fluviatile_contig7.13473.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig7 451999..458607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig7.13473.1 ID=prot_P-fluviatile_contig7.13473.1|Name=mRNA_P-fluviatile_contig7.13473.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=277bp
MDASKSSAGDWRRSEERGNGVEKRPHPAPTRRSTEAGSSCTCGTSLVSPA
AAARPTVGAMGSPLTQHLSTGGGGGIRGSSSGSSIFLTVLDAEDPGCRAM
VPYTASPIRRTPLRNRLALPAPPSLLALPASAEDIFSPSTSFSASTHISS
QAVGGAGARGGIWRSRVDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQG
NDDQYWRRLCRARFNVTPDAFAPPPDPIKRLYQLQHGSFKAVCRGCRHGF
NTAAPPSISPHTSAQLLMGLMISNAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf