prot_P-fluviatile_contig61.12836.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig61.12836.1
Unique Nameprot_P-fluviatile_contig61.12836.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length553
Homology
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 517 bits (1331), Expect = 6.570e-176
Identity = 336/584 (57.53%), Postives = 393/584 (67.29%), Query Frame = 0
Query:    1 MASPSRLRPRAQAWHFGSARFLLSVAAIVRSGLHDAKAFALLPPGRYSVPPAVA----------QATDAAFARSRSCCCGSRPIPADDKSAGLGANGCRGQGXXXXXXXXXXXXXSCSVDAGAGGAAGSRASDVIGGAGPSAAVVVGEGGGLREEAEADAAVAVRGEKKTTQQLRAITRGLNSITAYAAYGHDRVREKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAG---------------------KAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLRRRPEKYFSSRQLVA--RSRAAGGVGSGGVAGGRRPGAVALVGGVISRDF 551
            M+S SRLRPR ++W  GSARFLLSVAAIVRSGLH A     LP G    P + +          +A  A  AR+      SRP      +  +  N  RG                CS   GA           +G A PS  VVVG GG       A    + R  K + Q++RA+TRGLNSIT++AAYG    R+  GR   +T+AEE++LVE+VK+L RYLK RE+LEAEL GR+PTREEWA+ L IS +EL+ QM+ASARAQERIV ANVGLI ++A +HHPATMA+GTI SDVIQEGSLA+LRAAETFDP+LG+RFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTAS+ EAAL  ELGR PTY EIAERM VDVERV RL+NC DA SLDDAP PS+ +       +G +G                         KAAP AGYRHE+VAC+MVNPEQRAE  LFESKLDKL++VLSEDE+LVVKLRYGLGG+SPTT  EVA RA ST HRVR+VETRALNKLRRRP +Y + +QL A  R R +GGVG      GRR G V   GGV++R+F
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQ----SRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGA-----------VGTAAPSE-VVVGVGGAA---GPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGS---RDTAGR---MTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDR---IGLSGGXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPGRY-ARQQLTAAARGRVSGGVGGAASVVGRR-GRVGRRGGVLAREF 554          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 3.830e-124
Identity = 244/420 (58.10%), Postives = 284/420 (67.62%), Query Frame = 0
Query:    1 MASPSRLRPRAQAWHFGSARFLLSVAAIVRSGLHDAKAFALLPPGRYSVPPAVAQATDAAF----ARSRSCCCGSRPIPADD----KSAGLGANGCRGQGXXXXXXXXXXXXXSCSVDAGAGGAAGSRASDVIGGAGPSAAVVVGEGGGLREEAEADAAVAVRGEKKTTQQLRAITRGLNSITAYAAYGHDRVREKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLA------SGGGG 406
            M+S SRLRPR ++W  GSARFLLSVAAIVRSGLH A     LP G    PP    A++       A +       +  P  D    +S    A  C   G             S  +     GA G+  S+V+          VG GG  R    A    + R  K + Q++RA+TRGLNSIT++AAYG    RE  GR   +T+AEE++LVE+VKLL RYLK RE+LEAEL GR+PTREEWA+ L IS +EL+ QMMASARAQERIVEANVGLI ++A +HHPATMA+GTI SDVIQEGSLA+LRAAETFDP+LG+RFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTAS+ EAAL  ELGR PTY EIAERMEVDVERV RL+NC DA SLDDAP PS+ +       SGGGG
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGA-GRPPRNGSASERLLLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRL-----GAVGTAPSEVV----------VGLGGAARP---ALLGASARARKASKQEVRAMTRGLNSITSFAAYGS---RETPGR---MTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMEVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGGG 395          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.450e-43
Identity = 110/316 (34.81%), Postives = 177/316 (56.01%), Query Frame = 0
Query:  190 GRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNC-QDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            G+   L   EE++L   V+ +  +   R+ L+ +L GR PT EEWAS + + PDEL R+++    A++ ++ +N+ L+  +A ++      +G  ++D+IQEGSL L+RA E FDP+ G +FSTY+ WW++  + R +  Q+R IRLP ++H+   T       LH  LGR PT  E+AERM + +E++R L  C + A S+D      +  +S       +AGK G           + +      P Q  EA++ +  ++KL+  LS  E+ V+++R+GL    P TL E+    + T  RVR +E RAL+KLR
Sbjct:  168 GQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQL-GRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQK----RGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSS-------SAGKGGEV------QLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLR 465          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: A0A5B8NHW9_9CHRO (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A5B8NHW9_9CHRO)

HSP 1 Score: 162 bits (411), Expect = 3.830e-41
Identity = 114/333 (34.23%), Postives = 169/333 (50.75%), Query Frame = 0
Query:  175 TAYAAYGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            T   +Y  D +R   ++ GR R L   EE+ L   +  L    + R ELEA + G +PT EEWA  + +   +  R++M   RA+E++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  ELGR PT  EIAERME+ +E++R +          + P                 GK       E     + +      PE      L    L+ +++ LS  E+ V++LRYGL      TL E+ Q  N T  R+R +E +AL KLR
Sbjct:   80 TEKKSYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATI-GSEPTLEEWAQEVDMPLPKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPI----------------GK------EEDSRLGDFIEADGETPEDEVSKSLLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 385          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: K9YFR5_HALP7 (RNA polymerase sigma factor SigA n=3 Tax=Cyanobacteria TaxID=1117 RepID=K9YFR5_HALP7)

HSP 1 Score: 162 bits (410), Expect = 4.750e-41
Identity = 124/365 (33.97%), Postives = 185/365 (50.68%), Query Frame = 0
Query:  145 EAEADAAVAVRGEKKTTQQLRAITRGLNSI--TAYAAYGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            E EA   VA   E+ +T+ + A T+  NS   +   +Y  D +R   ++ GR R L   EE+ L   +  L    + R ELEA + G +PT EEWA  + +   +  R++M   RA+E++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  ELGR PT  EIAERME+ +E++R +          + P                 GK       E     + +      PE      L    L+ +++ LS  E+ V++LRYGL      TL E+ Q  N T  R+R +E +AL KLR
Sbjct:   44 EKEALLEVAEASEETSTKAVTA-TKEENSKEDSKKKSYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATI-GCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPI----------------GK------EEDSRLGDFIEADGETPEDEVSKSLLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: A0A6U3P0N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P0N0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.360e-39
Identity = 112/355 (31.55%), Postives = 184/355 (51.83%), Query Frame = 0
Query:  186 REKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAEL--DGR----QPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAK--------GTIMS--DVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERV-------RRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLRRRPEKYFSSRQLV 517
            +E + R   LT  EE+ L   ++ L   ++ R++L AEL  DG     +P   +WA   ++S  +L R +     A+ R+V ANVGLI  +A +H+ A            GTI++  D++QEG+L L+ AAE FDP  G RFSTYA WW+R R+ + +   +R+IRLP +VH+  RT +     +  E+GR P+  E+A ++E+ +E++       R +L+ + + + D                          A  +A    +++A     PE+ AE D    ++  +++ L   E+ V+  R+GL   SP T+ + A+R   +  RVR VE RALNKLR  P++ +  ++ V
Sbjct:  150 KESSSRSDLLTREEEVELTSAIRTLKSVVRIRDDLGAELSIDGGATMGEPLEADWAEACSLSVAQLRRTLHFGQEARTRLVSANVGLIMNIARRHYYALKRSVHSGKGGIGTILTLQDMVQEGNLGLMEAAERFDPARGFRFSTYAAWWIRQRILQSIADYSRVIRLPVHVHSTLRTINRTRKEMEKEIGRPPSMPELAHKLEMPLEKLTFYADTSRNVLSLESSLNND--------------------------AVDDARTLGDRIASDAPTPEEDAEVDSLRQEIRAVIDGLGNKERDVLVSRFGLDDGSPKTVEQTAKRLGISRDRVRNVEARALNKLRH-PQRNYRLKEYV 477          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: UPI000B997F52 (RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. 8F6 TaxID=2025606 RepID=UPI000B997F52)

HSP 1 Score: 158 bits (399), Expect = 3.420e-39
Identity = 116/358 (32.40%), Postives = 178/358 (49.72%), Query Frame = 0
Query:  150 AAVAVRGEKKTTQQLRAITRGLNSITAYAAYGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            AA     + K  + L +I  G   +     Y  D +R   ++ GR R L   EE+ L   +  L +  +   + EA+ +GRQP   EWA  + + P +  R++M   RA+E++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  E GR PT  EIAE ME+ +E++R +          + P                 GK       E     + +   + NPEQ    +L    L+ ++  LS  E+ V++LRYGL      TL E+ Q  + T  R+R +E +AL KLR
Sbjct:   91 AAAVAEKDNKAAKALASIKVGPKGV-----YTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEIAAQFEAD-NGRQPDNREWAVLVEMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI----------------GK------EEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 416          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: UPI00140E3E06 (RNA polymerase sigma factor RpoD n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI00140E3E06)

HSP 1 Score: 156 bits (395), Expect = 4.000e-39
Identity = 109/328 (33.23%), Postives = 167/328 (50.91%), Query Frame = 0
Query:  180 YGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            Y  D +R   ++ GR R L   EE+ L   +  L  + + ++EL  +LD R+P  EEWA+ + I   E   ++    RA++++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  E+GR PT  EIA RME+ +E++R +          + P                 GK       E     + +      PE +    L    L+ +++ LS  E+ V+KLRYGL      TL E+ Q  N T  R+R +E +AL KLR
Sbjct:   61 YTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEFERVQDELYDQLD-REPNLEEWAAAVNIPAQEFRIRLHRGRRAKDKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI----------------GK------EEDSRLGDFIESDGETPEDQVSKSLLREDLESVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 361          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: Q59965_SYNP2 (RNA polymerase sigma factor SigA n=7 Tax=Cyanobacteria TaxID=1117 RepID=Q59965_SYNP2)

HSP 1 Score: 156 bits (395), Expect = 4.090e-39
Identity = 111/340 (32.65%), Postives = 169/340 (49.71%), Query Frame = 0
Query:  168 TRGLNSITAYAAYGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            +R   + T    Y  D +R   ++ GR R L   EE+ L   +  L    + RE+L  E + R PT +EWA    +   +  R++    RA++++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  ELGR PT  EIAERME+ +E++R +          + P                 GK       E     + +      PE +    L    L+ +++ LS  E+ V++LRYGL      TL E+ Q  N T  R+R +E +AL KLR
Sbjct:   50 SRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQL-TEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPI----------------GK------EEDSRLGDFIEADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 362          
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Match: A0A354WJ86_9CYAN (RNA polymerase sigma factor SigA n=4 Tax=Planktothrix TaxID=54304 RepID=A0A354WJ86_9CYAN)

HSP 1 Score: 157 bits (396), Expect = 4.940e-39
Identity = 107/328 (32.62%), Postives = 167/328 (50.91%), Query Frame = 0
Query:  180 YGHDRVR---EKTGRRRSLTVAEEMVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMMASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAAETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVMEAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPLASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLDKLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRALNKLR 504
            Y  D +R   ++ GR R L   EE+ L   +  L    + RE L    D R+P  +EWAS + +   E  R++    RA++++V++N+ L+  +A K+    M +G    D+IQEGSL L+RAAE FD + G++FSTYA WW+R  +TR +  Q+R IRLP +++            L  E+GR PT  EIA RME+ +E++R +          + P                          E     + +    + PE +   +L    L+ +++ L+  E+ V++LRYGL  S   TL E+AQ  N T+ R+R +E +AL KLR
Sbjct:   78 YTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRERLIEHYD-REPNEQEWASAVEMRLPEFRRRLYIGRRAKDKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIRKE----------------------EDSRLGDFIESDGLTPEDQVYKNLLREDLENVLDTLNPRERDVLRLRYGLDDSQMKTLEEIAQIFNVTSERIRQIEAKALRKLR 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig61.12836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA7_ECTSI6.570e-17657.53RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNQ9_9PHAE3.830e-12458.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WX55_9STRA1.450e-4334.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5B8NHW9_9CHRO3.830e-4134.23RNA polymerase sigma factor SigA n=2 Tax=Cyanobact... [more]
K9YFR5_HALP74.750e-4133.97RNA polymerase sigma factor SigA n=3 Tax=Cyanobact... [more]
A0A6U3P0N0_9STRA2.360e-3931.55Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
UPI000B997F523.420e-3932.40RNA polymerase sigma factor RpoD n=1 Tax=Synechoco... [more]
UPI00140E3E064.000e-3933.23RNA polymerase sigma factor RpoD n=1 Tax=Aphanocap... [more]
Q59965_SYNP24.090e-3932.65RNA polymerase sigma factor SigA n=7 Tax=Cyanobact... [more]
A0A354WJ86_9CYAN4.940e-3932.62RNA polymerase sigma factor SigA n=4 Tax=Planktoth... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 311..319
score: 71.18
coord: 492..503
score: 44.95
coord: 287..300
score: 52.81
coord: 477..492
score: 36.13
coord: 456..468
score: 39.16
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 435..511
e-value: 5.7E-16
score: 60.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 334..385
e-value: 3.1E-9
score: 38.7
NoneNo IPR availableGENE3D1.10.601.10coord: 143..333
e-value: 1.6E-25
score: 92.4
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 157..513
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 157..513
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..552
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..40
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 353..384
e-value: 5.9E-7
score: 29.5
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 260..331
e-value: 2.6E-10
score: 39.9
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 453..505
e-value: 1.2E-9
score: 37.5
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 433..510
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 332..383
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 188..332

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig61contigP-fluviatile_contig61:208650..214672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig61.12836.1mRNA_P-fluviatile_contig61.12836.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig61 208621..216216 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig61.12836.1 ID=prot_P-fluviatile_contig61.12836.1|Name=mRNA_P-fluviatile_contig61.12836.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=553bp
MASPSRLRPRAQAWHFGSARFLLSVAAIVRSGLHDAKAFALLPPGRYSVP
PAVAQATDAAFARSRSCCCGSRPIPADDKSAGLGANGCRGQGRARGRGHG
RHRGLSCSVDAGAGGAAGSRASDVIGGAGPSAAVVVGEGGGLREEAEADA
AVAVRGEKKTTQQLRAITRGLNSITAYAAYGHDRVREKTGRRRSLTVAEE
MVLVEDVKLLNRYLKAREELEAELDGRQPTREEWASRLAISPDELSRQMM
ASARAQERIVEANVGLIKLLAHKHHPATMAKGTIMSDVIQEGSLALLRAA
ETFDPQLGHRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASVM
EAALHNELGRTPTYAEIAERMEVDVERVRRLLNCQDASSLDDAPFPSSPL
ASGGGGGVGAAGKAGAKAAPEAGYRHEKVACTMVNPEQRAEADLFESKLD
KLMNVLSEDEKLVVKLRYGLGGSSPTTLTEVAQRANSTAHRVRVVETRAL
NKLRRRPEKYFSSRQLVARSRAAGGVGSGGVAGGRRPGAVALVGGVISRD
FS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007624RNA_pol_sigma70_r3
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2