prot_P-fluviatile_contig6.12698.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig6.12698.1
Unique Nameprot_P-fluviatile_contig6.12698.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length141
Homology
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.300e-19
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQE 72
            MPR+EA EIEA+VT+ AQS+CPGVICQ                   ACGSYRRGKSHCGDVD+LIRPPEGQE
Sbjct:  184 MPRSEAAEIEAVVTKVAQSICPGVICQ-------------------ACGSYRRGKSHCGDVDVLIRPPEGQE 236          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.870e-18
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQE 72
            MPR+EA EIEA VT+ AQS+CPGVICQAS    L  P   T     ACGSYRR K +CGDVD+LIRPPEGQE
Sbjct:  403 MPRSEAAEIEAAVTKVAQSICPGVICQASF---LTSPRRRT----EACGSYRRVKRNCGDVDVLIRPPEGQE 467          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.830e-17
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQE 72
            MPR+EA EIEA VT+ AQS+CPGVICQ                   ACGSYRRGKS+CGDVD+LIRPPEGQE
Sbjct:  443 MPRSEAAEIEAAVTKVAQSICPGVICQ-------------------ACGSYRRGKSNCGDVDVLIRPPEGQE 495          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-15
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQE 72
            MPR+EA EIEA+VTR AQS+CPG                       ACGSYRRGKSHCGDVD+LIRPPEGQE
Sbjct:  660 MPRSEAAEIEAVVTRVAQSICPG-----------------------ACGSYRRGKSHCGDVDVLIRPPEGQE 708          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: UPI001CA968BB (DNA polymerase lambda isoform X2 n=2 Tax=Chelonioidea TaxID=27791 RepID=UPI001CA968BB)

HSP 1 Score: 63.9 bits (154), Expect = 3.460e-9
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQ 71
            MPR EA+EIE  V  AA+SL PG++C                    ACGSYRRGK+ CGDVD+L+  P+GQ
Sbjct:  212 MPREEAKEIEQTVREAARSLNPGLVCM-------------------ACGSYRRGKATCGDVDVLVTHPDGQ 263          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: A0A8C0G3I4_CHEAB (DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0G3I4_CHEAB)

HSP 1 Score: 62.8 bits (151), Expect = 6.360e-9
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQ 71
            MPR EA EIE  V++AA SL PG++C                    ACGSYRRGK+ CGDVD+L+  P+GQ
Sbjct:  103 MPREEAAEIEQTVSKAAWSLNPGLVCV-------------------ACGSYRRGKATCGDVDVLVTHPDGQ 154          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: A0A8D2LGY6_VARKO (DNA polymerase n=5 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LGY6_VARKO)

HSP 1 Score: 62.0 bits (149), Expect = 1.110e-8
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEG 70
            MPR EA EIE +V  AAQS+ PG++C                    ACGS+RRGKS CGDVD+L+  P+G
Sbjct:   90 MPREEAAEIEQVVREAAQSMNPGLVCV-------------------ACGSFRRGKSTCGDVDVLVTHPDG 140          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: UPI001D165D9B (DNA polymerase lambda isoform X6 n=1 Tax=Mauremys mutica TaxID=74926 RepID=UPI001D165D9B)

HSP 1 Score: 62.4 bits (150), Expect = 1.200e-8
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEGQ 71
            MPR EA EIE  V  AA+SL PG++C                    ACGSYRRGK+ CGDVD+L+  P+GQ
Sbjct:  219 MPREEAAEIEQTVREAARSLNPGLVCV-------------------ACGSYRRGKATCGDVDVLVTHPDGQ 270          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: A0A151MLI3_ALLMI (DNA polymerase n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151MLI3_ALLMI)

HSP 1 Score: 62.4 bits (150), Expect = 1.260e-8
Identity = 34/70 (48.57%), Postives = 40/70 (57.14%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEG 70
            MPRAEA EIE  V  AAQ+L PG++C                    ACGSYRRGK  CGDVD+L+  P+G
Sbjct:  296 MPRAEAAEIEQRVREAAQALDPGLVCV-------------------ACGSYRRGKPSCGDVDVLVTHPDG 346          
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Match: UPI001E1DF101 (DNA polymerase lambda-like isoform X2 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF101)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-8
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0
Query:    1 MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGSYRRGKSHCGDVDMLIRPPEG 70
            MPR+EA EIE +V  AA+SL  G+ICQ                   ACGSYRRGK+ CGDVD+L+  P+G
Sbjct:  378 MPRSEAGEIEKVVKDAAESLQEGIICQ-------------------ACGSYRRGKATCGDVDILVTHPDG 428          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F8_ECTSI7.300e-1963.89DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JQ91_9PHAE3.870e-1866.67DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI1.830e-1762.50DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JHQ3_9PHAE1.420e-1559.72DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
UPI001CA968BB3.460e-947.89DNA polymerase lambda isoform X2 n=2 Tax=Chelonioi... [more]
A0A8C0G3I4_CHEAB6.360e-947.89DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxI... [more]
A0A8D2LGY6_VARKO1.110e-847.14DNA polymerase n=5 Tax=Varanus komodoensis TaxID=6... [more]
UPI001D165D9B1.200e-847.89DNA polymerase lambda isoform X6 n=1 Tax=Mauremys ... [more]
A0A151MLI3_ALLMI1.260e-848.57DNA polymerase n=1 Tax=Alligator mississippiensis ... [more]
UPI001E1DF1011.290e-848.57DNA polymerase lambda-like isoform X2 n=1 Tax=Merc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.460.10coord: 1..91
e-value: 2.3E-12
score: 49.0
NoneNo IPR availablePANTHERPTHR11276DNA POLYMERASE TYPE-X FAMILY MEMBERcoord: 1..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..140
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..118
NoneNo IPR availableSUPERFAMILY81301Nucleotidyltransferasecoord: 46..73
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
IPR028207DNA polymerase beta, palm domainPFAMPF14792DNA_pol_B_palmcoord: 45..72
e-value: 5.4E-9
score: 36.3
IPR019843DNA polymerase family X, binding sitePROSITEPS00522DNA_POLYMERASE_Xcoord: 49..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:3738249..3738954 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12698.1mRNA_P-fluviatile_contig6.12698.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig6 3738248..3739501 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig6.12698.1 ID=prot_P-fluviatile_contig6.12698.1|Name=mRNA_P-fluviatile_contig6.12698.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=141bp
MPRAEAQEIEALVTRAAQSLCPGVICQASLSRRLKVPSFETAPSGNACGS
YRRGKSHCGDVDMLIRPPEGQEVCMRGQNACAREQERGRGRDRSPIVPLV
YLPAFCWVLAVSVATFPWTVQPKKPGVYCTSVEYSFSALL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028207DNA_pol_B_palm_palm
IPR019843DNA_pol-X_BS