prot_P-fluviatile_contig6.12665.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig6.12665.1
Unique Name	prot_P-fluviatile_contig6.12665.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	195

Homology

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BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.970e-18
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0

Query:    3 WDTVIDVLGSAAGVLVAGALLPQIWRTHMRRSGADLSLSWQVTLAVGLALQLVYLYHNAKWAVFVPLSCELVFILYLAGLKLYYEDRLFIVGP 95
            W+   +++G   GV++A ALLPQI+  H R+S AD+S  WQ    VGL   ++Y +H   WAVF P++ E   ++YL GLK+YYE  L  V P
Sbjct:    4 WEDPFNIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYEVCLGNVAP 96

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BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot
Match: D7G1V6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.490e-11
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 0

Query:    4 DTVIDVLGSAAGVLVAGALLPQIWRTHMRRSGADLSLSWQVTLAVGLALQLVYLYHNAKWAVFVPLSCELVFILYLAGLKLYYED 88
            D +    G+A G+L+AGA LPQI+    R    D+S  +Q   A G+   L+Y  +N  WAVFVP    LV + YL GLK Y E+
Sbjct:   15 DQLFRACGTAGGLLLAGAQLPQIYHVTKRGKSRDISYMYQFIFAGGMICFLIYYGYNGLWAVFVPSCLSLVCMCYLIGLKAYLEE 99

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BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot
Match: D0N1M1_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0N1M1_PHYIT)

HSP 1 Score: 60.8 bits (146), Expect = 8.030e-9
Identity = 27/80 (33.75%), Postives = 50/80 (62.50%), Query Frame = 0

Query:    8 DVLGSAAGVLVAGALLPQIWRTHMRRSGADLSLSWQVTLAVGLALQLVYLYHNAKWAVFVPLSCELVFILYLAGLKLYYE 87
             +LG    +L+A +L+PQ  + +  +S  D+SLS+Q++  +GLA+ +VY +    W V++P + EL   + +  +KLYY+
Sbjct:    6 QILGFLGSLLLAASLVPQAMKLYKTKSAKDISLSYQISYVLGLAMIVVYGFGRWLWPVYIPATIELCAAIIVFSMKLYYD 85

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BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot
Match: A0A0W8D2A9_PHYNI (Isoleucine--tRNA ligase n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D2A9_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 8.730e-8
Identity = 27/80 (33.75%), Postives = 50/80 (62.50%), Query Frame = 0

Query:    8 DVLGSAAGVLVAGALLPQIWRTHMRRSGADLSLSWQVTLAVGLALQLVYLYHNAKWAVFVPLSCELVFILYLAGLKLYYE 87
             +LG    +L+A +L+PQ  + +  +S  D+SLS+Q++  +GLA+ +VY +    W V++P + EL   + +  +KLYY+
Sbjct:    6 QILGFLGSLLLAASLVPQAMKLYRTKSARDISLSYQISYVLGLAMIVVYGFGRWLWPVYIPATIELCAAIVVFSMKLYYD 85

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig6.12665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D8LCW9_ECTSI	2.970e-18	44.09	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G1V6_ECTSI	1.490e-11	42.35	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D0N1M1_PHYIT	8.030e-9	33.75	Uncharacterized protein n=11 Tax=Phytophthora TaxI...	[more]
A0A0W8D2A9_PHYNI	8.730e-8	33.75	Isoleucine--tRNA ligase n=2 Tax=Phytophthora nicot...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.290		coord: 4..90 e-value: 2.3E-12 score: 48.8
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..38
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 87..194
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..59
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..64
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27
None	No IPR available	TMHMM	TMhelix		coord: 64..86
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	TMHMM	TMhelix		coord: 40..59
IPR006603	PQ-loop repeat	PFAM	PF04193	PQ-loop	coord: 7..61 e-value: 1.1E-6 score: 28.3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig6	contig	P-fluviatile_contig6:3420614..3423097 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig6.12665.1	mRNA_P-fluviatile_contig6.12665.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig6 3420348..3424530 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig6.12665.1 ID=prot_P-fluviatile_contig6.12665.1|Name=mRNA_P-fluviatile_contig6.12665.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=195bp
MGWDTVIDVLGSAAGVLVAGALLPQIWRTHMRRSGADLSLSWQVTLAVGL
ALQLVYLYHNAKWAVFVPLSCELVFILYLAGLKLYYEDRLFIVGPRIGDW
LAVGRKTAGISWSEDYQSIAGASSGGEEEPIRHGGTTGTSGGGGGGGGDG
GGDGGGGEGDGRRAAAAADPPYQAPGHAEKGRPANADEDPSSAS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006603	PQ-loop_rpt