prot_P-fluviatile_contig6.12560.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig6.12560.1
Unique Nameprot_P-fluviatile_contig6.12560.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length517
Homology
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 6.400e-129
Identity = 198/233 (84.98%), Postives = 214/233 (91.85%), Query Frame = 0
Query:  196 NPFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKAAGRGRDKELAVKKARGERANAGGG---SGTGWVSR 425
            NPFIVFVGQLAFSTTAE +EEHFRTRGGIEG ISVRLLTRKGTNPP+S+GMAF++V+DA SAY+CL LHHSRLDGRLLNVERTSGGGKEKK + IQEKRG+QKEFMKSVVQRVLGEFI AGRLGKTELDEAAQ VLEKMEAKVMERAVKDYCDKPDRL+LHNPSAWFTHHAHELCFRSDPE L+A ARDWL+DE++KA GR RDKE A +KARGER N GGG   SG+GWVSR
Sbjct:  193 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLDDEKIKAGGRSRDKEKAARKARGERVNVGGGGRGSGSGWVSR 425          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 5.570e-124
Identity = 194/238 (81.51%), Postives = 208/238 (87.39%), Query Frame = 0
Query:  196 NPFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKAAGRGRDKELAVKKARGERANAGGGSGT-------GWVSRG 426
            NPFIVFVGQLAFSTTAE +EEHFRTRGGIEG ISVRLLTRKGTNPP+S+GMAF++V+DA SAY+CL LHHSRLDGRLLNVERTSGGGKE+K + IQEKRGEQKEFMKSVVQRVLGEFI AGRLGKTELDEAAQ VLEKMEAKVMERAVKDYCDKPDRL+L NPSAWFTHHAHELCFRSDPE L+A ARDWLNDE++KA GR RDKE A +KARGER N              GWVSRG
Sbjct:  178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIKAGGRNRDKEKAARKARGERVNGXXXXXXXXXXXXXGWVSRG 415          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.060e-47
Identity = 107/204 (52.45%), Postives = 131/204 (64.22%), Query Frame = 0
Query:  190 RGGGHANPFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKA 393
            R G  A P +VFVGQL+F TT   +EEHFR RGG+EG++ VRLLT   TN  RS+GMAFVE E   + Y+CL LHH+RLDGR+LNVERTSGG  +   + I   R EQK  MK  V R++GEFI  G L + ELD  A  VLEK E KV+E+A+ DYC KPD+  L N SA+F H  H + F    E LD         E++KA
Sbjct:  159 RTGKKAAPLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLTNP-TNG-RSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGGKGDAHKQKISSLREEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAF---DEALDLDKEVEEAREKLKA 357          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.050e-29
Identity = 78/211 (36.97%), Postives = 126/211 (59.72%), Query Frame = 0
Query:  193 GHANPFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSG-GGKEKKVKI--IQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKP---DRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKAAGRG 397
            G  NP IVFVGQL++ TTAE +++HF    G+EG I+VRL T   T   RS+GMAFVE++   + ++CL LHH+ LDGR +NVE+++G GG+    +   ++++R  Q+E +   V R++ E ++A +L + E+DE   A+L + E +++E A+  +C +    DR  + NPSA  TH   +          +  A+  + ++R    GRG
Sbjct:   15 GRRNPCIVFVGQLSYRTTAEQLKKHFAA-AGVEGNIAVRLRTDPKTK--RSRGMAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRGGRATGARATKLKDQRAAQQETIDGAVARMVDERVEAKKLARGEIDERCIALLSRFEGRIVELALDAFCMRGAPGDRGGIANPSAMVTHLVRKAAADLPKFQEEVEAQKVIEEQRRAKQGRG 222          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A7S3XJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ31_HETAK)

HSP 1 Score: 122 bits (305), Expect = 8.050e-27
Identity = 78/200 (39.00%), Postives = 114/200 (57.00%), Query Frame = 0
Query:  197 PFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGG-GKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKAAG 395
            P IVFVGQL F TT++ IE+HFR    I G I VRLLT K T  P  KGMAFVEV +    YKCL LHHS L+ R +NVE++ GG   +K+ + I E + +Q++ +++ V+R+L EF D G + +TE +E     L   E  ++E A+K Y D+ D+  + N +A       +L      E  +   ++  N +  +  G
Sbjct:   71 PNIVFVGQLDFKTTSKQIEDHFRAHD-IHGFIKVRLLTDKVTKKP--KGMAFVEVSNPTEMYKCLKLHHSSLNRRRINVEKSCGGKNTDKRKEKINELKQKQRQAVETTVKRILKEFTDRGDISETEFNETLMERLVSYEGTIVEEALKKYVDE-DKEKVQNRTALLVSLVRDLDNEKAKEREEKLKKEAANKKAAEVFG 266          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: B8C2M8_THAPS (RRM domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2M8_THAPS)

HSP 1 Score: 122 bits (305), Expect = 3.030e-26
Identity = 74/200 (37.00%), Postives = 112/200 (56.00%), Query Frame = 0
Query:  197 PFIVFVGQLAFSTTAEAIEEHFRTRGG----IEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKP-------------DRLDLHNPSAWFTHHAHELCFRSDPEGLD 379
            P+IVF+GQL++STT + I +HF    G     +  + +RLLT   T   +S+GMAFVE++   + Y+CL +H + LDGR +NVERT+GGG   K   I   R EQ  ++   +  +L E++  G + + ELDE   A+ ++  A V+ERA+ +Y D+              +  +L NPSA+ TH    +  R   EGLD
Sbjct:  193 PYIVFIGQLSYSTTTDMIYDHFHNTLGPDVITKESVKIRLLTDSKTK--KSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGGGAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKRHSATVVERALNEYVDEKKVRKERKETLGEKEEEELRNPSAFLTH----MIGRIAEEGLD 386          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.870e-26
Identity = 69/178 (38.76%), Postives = 112/178 (62.92%), Query Frame = 0
Query:  195 ANPFIVFVGQLAFSTTAEAIEEHFRTRGGIEGK------ISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKE---KKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFT 363
            ++P+++F+GQL++ TT E +  HF+   G + K      + +RLLT   T   RS+G+AFVE ED  + Y CL LHH+ LDGR +NVER++GG KE   +K KI Q ++ EQ+E+M   + +++ +F   G + + ELDE   A++++  A ++E A+ +Y ++     L NPSA+ T
Sbjct:  231 SSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLTDSKTG--RSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKKESETRKGKITQYRK-EQEEYMSGTIDKIIADFQSRGDISEGELDEGVVALMKRNSAALVETALAEYVEERGE-SLDNPSAYLT 404          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A6V2LJ41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LJ41_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.140e-24
Identity = 67/190 (35.26%), Postives = 108/190 (56.84%), Query Frame = 0
Query:  196 NPFIVFVGQLAFSTTAEAIEEHFRTRGGIE----GKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGG--GKEKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFTHHAHELCFRSDPEGLD 379
            +P IVF+GQL+++TT + I +HF+   G +      +S+RLLT    N  +S+GMAF+E  D    Y CL LHH+ LDGR +NVER++GG  G E +   ++  R EQ+E++   V ++L ++   G L ++ELD+   A+ ++    V+  A+ +Y +      + NPSA+ TH    +      E  D
Sbjct:   40 DPCIVFIGQLSYTTTKDQIFQHFQNELGSDVVTPDTLSIRLLTDPTKNN-KSRGMAFIETTDPELMYNCLKLHHTHLDGRRINVERSAGGNKGSEARQNKLKRYRTEQEEYLSETVNKILEDYKAQGDLNESELDDGVIALCKRHSPHVVSAALSEYVEARGG-HMENPSAYLTHIIGRIAVEGQEEHRD 227          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: A0A6U9Z0P3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9Z0P3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.030e-22
Identity = 71/181 (39.23%), Postives = 103/181 (56.91%), Query Frame = 0
Query:  192 GGHANPFIVFVGQLAFSTTAEAIEEHFRTRGG-------IEGKISVRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGK--EKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKPDRLDLHNPSAWFT 363
            G H +P I FVGQL++ TT++ + EH  +  G       I+    +RLLT   T   RS+GMAFVEV+D    Y  L LH + L GR +NVER++GG K  E +   ++  R EQ  F   +V+ +L E+   G L + ELDE    V ++    V++ AV +Y +K  R D++NPSA+ T
Sbjct:  199 GSHRDPLIAFVGQLSYETTSDDLLEHICSNLGDDYPASKIKKMTKIRLLT--DTKTKRSRGMAFVEVDDPEFLYALLKLHQTYLKGRRINVERSAGGKKYSEARKSKLENYRKEQGAFFAEIVENILAEYKKTGELREDELDEGVITVCKRHSGPVVQAAVAEYMEKGGR-DMNNPSAYLT 376          
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Match: B7FSS2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSS2_PHATC)

HSP 1 Score: 102 bits (255), Expect = 1.140e-20
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 0
Query:  197 PFIVFVGQLAFSTTAEAIEEHFRTRGGIEGKIS-----VRLLTRKGTNPPRSKGMAFVEVEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGK---EKKVKIIQEKRGEQKEFMKSVVQRVLGEFIDAGRLGKTELDE 325
            P+IVFVGQL++ TT +++ +H R   G E K++     +RLLT   T   +S+GMAFVEV D    Y CL LHH+ L+GR LNVERT+GG K   ++K KI Q++R EQ+++  +VV  +L E   +G +   E+D+
Sbjct:  142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLTDAKTK--KSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKSSDQRKTKI-QQRRQEQEQYFGTVVDNMLQEHYKSGEIKPHEIDD 275          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAW2_9PHAE6.400e-12984.98RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGT1_ECTSI5.570e-12481.51RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A836CEL8_9STRA1.060e-4752.45RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1TQR3_9STRA2.050e-2936.97Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3XJ31_HETAK8.050e-2739.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8C2M8_THAPS3.030e-2637.00RRM domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S4JM15_9STRA9.870e-2638.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6V2LJ41_9STRA4.140e-2435.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U9Z0P3_9STRA1.030e-2239.23Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B7FSS2_PHATC1.140e-2044.53Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..166
NoneNo IPR availableCOILSCoilCoilcoord: 3..33
NoneNo IPR availablePANTHERPTHR23236:SF51EUKARYOTIC INITIATION FACTOR 4Bcoord: 9..350
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 9..350
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 199..276
e-value: 4.8E-11
score: 52.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 200..273
e-value: 2.6E-8
score: 33.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 198..280
score: 11.742
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 135..290
e-value: 1.2E-15
score: 59.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 196..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:2358819..2362276 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12560.1mRNA_P-fluviatile_contig6.12560.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig6 2358668..2362276 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig6.12560.1 ID=prot_P-fluviatile_contig6.12560.1|Name=mRNA_P-fluviatile_contig6.12560.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=517bp
MNANERRAARRKAEQQQQQAQQQQRHQHQQQEQFPPQQQEQQQQQQQTTA
TSNSKARAISSNPVDPGMTAKERRAAKRAAERAASTAAETAPAPAATATT
AKERRAAKRAAARDAGTLKTATTASPPPPLSTPTEAAPTAGTGAMNAKER
RLLRREEERKKRERELGGGDGGISGGAPPAKRAKGAAGKRGGGHANPFIV
FVGQLAFSTTAEAIEEHFRTRGGIEGKISVRLLTRKGTNPPRSKGMAFVE
VEDAVSAYKCLGLHHSRLDGRLLNVERTSGGGKEKKVKIIQEKRGEQKEF
MKSVVQRVLGEFIDAGRLGKTELDEAAQAVLEKMEAKVMERAVKDYCDKP
DRLDLHNPSAWFTHHAHELCFRSDPEGLDAAARDWLNDERVKAAGRGRDK
ELAVKKARGERANAGGGSGTGWVSRGGGSRVMGRGRGAFRAGRGRGGDGD
AAAGGSSGGGDGDCVPADDGAAARGKWARFRPSVNPAAARRGAAGRDGGS
GGGEGGESQRHRQQRDT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf