prot_P-fluviatile_contig6.12343.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig6.12343.1
Unique Nameprot_P-fluviatile_contig6.12343.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length193
Homology
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BLAST of mRNA_P-fluviatile_contig6.12343.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.490e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 
Query:  143 NSNGKVSQVINVTNAMQGAKSLMMKLKIQFRRGAASVAEVAQVAQFPAGY 192
            +S+G VSQ INVTNAMQG KSLMMKLKIQFRRG  +VAEVAQVAQFPAG+
Sbjct:  839 HSDGVVSQEINVTNAMQGTKSLMMKLKIQFRRGTVNVAEVAQVAQFPAGF 888
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12343.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP4_ECTSI4.490e-1482.00AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1230coord: 136..192
e-value: 1.7E-7
score: 33.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..68
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..192
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilySUPERFAMILY49348Clathrin adaptor appendage domaincoord: 138..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:225286..225864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12343.1mRNA_P-fluviatile_contig6.12343.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig6 225022..226662 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig6.12343.1 ID=prot_P-fluviatile_contig6.12343.1|Name=mRNA_P-fluviatile_contig6.12343.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=193bp
MMRTGALSRAESSGEGKLCSSLPHLQLCLDSVGPGNLGQSAPEISGDAWS
LCRVVAGTFLIFFPLRLWKKRQQTLVFLEKQNIFIVPAVTARSTGSPSLA
ATSAQRSFDYNTAYAASIIAPMNAYLVYSSVCTFAWPPFPVANSNGKVSQ
VINVTNAMQGAKSLMMKLKIQFRRGAASVAEVAQVAQFPAGY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013041Clathrin_app_Ig-like_sf