prot_P-fluviatile_contig57.12091.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig57.12091.1
Unique Nameprot_P-fluviatile_contig57.12091.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length313
Homology
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BLAST of mRNA_P-fluviatile_contig57.12091.1 vs. uniprot
Match: D8LBH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH3_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 4.210e-111
Identity = 186/323 (57.59%), Postives = 229/323 (70.90%), Query Frame = 0 
Query:    1 MGPRR-SYNYGTFIATPTCSSEEDCEGANTLNFTQR----SAPAFSTITASKDYRI-LRS----GLRLAKHGAAVVIAGLNDDVASARGLCEGDEVTHIDGEPLLGSLKAGQSRIEQGRESLSLRIQPGNDMAPGGAGFVKRAKHRVIQHVVRQGDSVEVIASLYGVTANTVRLWNRKYFPVGEPGFLCPGQILTLRDTSVDRNGDGPNATNRRVRQVTNVLRRKVVGDGVRKRMLYQVREGDTLKLICERFKLKEVELRGLNRSIFPIGEAGAIFAGQILTVFAEECGNLMTAEGSGQSADEEEHRVFVQCRAGRSSSLAPL 313
            MGPR+ SYNYGTFIA+P   +EED  G NT +  QR     APAFS +   ++YRI LR     GLRL KHG  VV++ ++DDVA ARGLCEGD VTH+DGEPLLGSLKA    ++Q  +SLSLR+Q G+  +  G G  ++AK+ V+QH+VRQGDSVE +A  YGVTA+ VR+WNRKYFPVGEPG LCPGQ+LTLRDT+ D+  D   A+       +   RRK  GDG RKRMLYQVREGD+LK IC R KLKE E+RGLNR +FP+GEAG +  GQ LTVFAE+C  L+T EGSG S +E + R F+Q   GR +  + L
Sbjct:    1 MGPRKKSYNYGTFIASPGHGAEEDY-GGNTASSYQRLLSAPAPAFS-VHHDQEYRIALREDGMFGLRLTKHGGEVVLSEMDDDVARARGLCEGDVVTHMDGEPLLGSLKAAAECMDQAGDSLSLRVQSGHSNSRTGDG-PRKAKYHVVQHIVRQGDSVEALAEQYGVTADEVRIWNRKYFPVGEPGCLCPGQVLTLRDTTADQAKDRNRAS-----LDSTARRRKSEGDGARKRMLYQVREGDSLKSICARLKLKEGEVRGLNRGVFPVGEAGVVLPGQTLTVFAEDCDILVTEEGSGHSTEELDERAFIQDFTGRKTKRSSL 315
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BLAST of mRNA_P-fluviatile_contig57.12091.1 vs. uniprot
Match: A0A0P1AJC6_PLAHL (Peptidoglycan-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJC6_PLAHL)

HSP 1 Score: 65.9 bits (159), Expect = 1.530e-8
Identity = 52/195 (26.67%), Postives = 89/195 (45.64%), Query Frame = 0 
Query:   93 PLLG------SLKAGQSRIEQGRESLSLRIQPGNDMAPGGAGFVKRAKHRVIQHVVRQGDSVEVIASLYGVTANTVRLWNRKYFPVGEPGFLCPGQILTLRDTSV-DRNGDGPNAT---NRRVRQVTNVLRRKVVGDGVR----KRMLYQVREGDTLKLICERFKLKEVELRGLNRSIFPIGEAGAIFAGQILTV 273
            PLLG       L  GQ  I +  E++ + + P  D    G G +         H+V  G+++  IA+LY  T   +R  NR+YFP GE G LCPGQ+L +R  +  +   D P  +   + +   ++++   +    G      +   + V   DT + IC+ F +       +NR  +P+G+   +  G+ + V
Sbjct:   57 PLLGRKTRHVKLYPGQQIIAE--EAIDVSLPPPPDYIDNGWGQM---------HLVSAGETLRHIAALYNTTEEILRQDNRRYFPTGERGLLCPGQLLHVRLINTGEMEKDDPTTSGDADAKALSLSSMSEEEATYTGTSAAFARYKTHLVAPEDTFESICKTFNIPYSYFLQINRGRYPVGKRAELVPGERVVV 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig57.12091.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBH3_ECTSI4.210e-11157.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0P1AJC6_PLAHL1.530e-826.67Peptidoglycan-binding protein n=1 Tax=Plasmopara h... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 139..187
e-value: 7.3E-4
score: 28.8
coord: 226..274
e-value: 0.001
score: 28.3
IPR018392LysM domainPFAMPF01476LysMcoord: 227..273
e-value: 4.0E-4
score: 20.4
coord: 140..185
e-value: 7.9E-4
score: 19.4
IPR018392LysM domainPROSITEPS51782LYSMcoord: 225..273
score: 9.497
IPR018392LysM domainPROSITEPS51782LYSMcoord: 138..186
score: 10.919
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 130..195
e-value: 5.0E-7
score: 31.2
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 224..273
e-value: 1.2E-5
score: 27.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig57contigP-fluviatile_contig57:101561..103880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig57.12091.1mRNA_P-fluviatile_contig57.12091.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig57 101561..103880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig57.12091.1 ID=prot_P-fluviatile_contig57.12091.1|Name=mRNA_P-fluviatile_contig57.12091.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=313bp
MGPRRSYNYGTFIATPTCSSEEDCEGANTLNFTQRSAPAFSTITASKDYR
ILRSGLRLAKHGAAVVIAGLNDDVASARGLCEGDEVTHIDGEPLLGSLKA
GQSRIEQGRESLSLRIQPGNDMAPGGAGFVKRAKHRVIQHVVRQGDSVEV
IASLYGVTANTVRLWNRKYFPVGEPGFLCPGQILTLRDTSVDRNGDGPNA
TNRRVRQVTNVLRRKVVGDGVRKRMLYQVREGDTLKLICERFKLKEVELR
GLNRSIFPIGEAGAIFAGQILTVFAEECGNLMTAEGSGQSADEEEHRVFV
QCRAGRSSSLAPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
IPR036779LysM_dom_sf