prot_P-fluviatile_contig56.12027.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig56.12027.1
Unique Nameprot_P-fluviatile_contig56.12027.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length95
Homology
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.340e-58
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDV VV+AERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK
Sbjct:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.240e-49
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQG 93
            LFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKLT V VV+ ER+PQLGA+K CFIRGS VRYIQIP+++VDTELLQDACRKE+A G
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQLGALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENASG 93          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.280e-48
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            QLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +V VV+ ++YPQL A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE+A  K
Sbjct:   12 QLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 105          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.260e-46
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +V VV+ ++YPQL A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE+A  K
Sbjct:   44 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 136          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.690e-46
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQ 92
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KLTDV VV+AER+PQL A+KNCFIRGSVVRY+QIP A+VDTELLQDA R+++ +
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQLTAMKNCFIRGSVVRYVQIPGAEVDTELLQDAARQQNKE 95          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.370e-46
Identity = 72/91 (79.12%), Postives = 86/91 (94.51%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQG 93
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KLTDV VV++ER+PQL A+KNCFIRGSVVRY+QIP+++VDTELLQDA R+++ +G
Sbjct:   49 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQLQAMKNCFIRGSVVRYVQIPASEVDTELLQDAARQQAKEG 139          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A024U6S4_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6S4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.840e-45
Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            LFYSFFKTL+GKE+AVELKNDVAL GTLHSVDQYLN+KLTDV VVE  +YPQL  +KNCFIRGSVVRYIQI  ADVDTELLQDA R+E +  +
Sbjct:    2 LFYSFFKTLIGKEVAVELKNDVALVGTLHSVDQYLNIKLTDVSVVEENKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARREGSANR 94          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A4D9DC94_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC94_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.280e-45
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            LFYSFFKTLVGKE+AVELKNDV LTG LHSVDQYLNVKL DV VV+ ERYPQL A+KN FIRGSV+R+IQ+P++DVD +LLQD+CRK++  GK
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASDVDVQLLQDSCRKDNQSGK 94          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.930e-45
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESA 91
            LFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKLTDV VV  E+YPQL  ++NCFIRGSVVRYIQI   DVDTELLQDA RKE+A
Sbjct:   39 LFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPLRNCFIRGSVVRYIQIAPGDVDTELLQDATRKENA 128          
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Match: A0A067CRV3_SAPPC (U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRV3_SAPPC)

HSP 1 Score: 148 bits (374), Expect = 1.030e-44
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
            LFYSFFKTLVGKE+AVELKNDVAL GTLHSVDQYLN KL DV VVE  +YPQL  +KNCFIRGSVVRYIQI  ADVDTELLQDA R+E++  K
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVALVGTLHSVDQYLNFKLVDVTVVEEHKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARREASANK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig56.12027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI3.340e-5897.85U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A835YRK1_9STRA1.240e-4983.70U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A7S3PVL2_9STRA8.280e-4881.91U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A7S3PVB5_9STRA1.260e-4681.72Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3SK19_9STRA2.690e-4681.11U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A7S2RW57_9STRA8.370e-4679.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024U6S4_9STRA1.840e-4578.49U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=A... [more]
A0A4D9DC94_9STRA3.280e-4576.34U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=N... [more]
A0A7S2U7M8_9STRA3.930e-4582.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A067CRV3_SAPPC1.030e-4479.57U6 snRNA-associated Sm-like protein LSm2 n=2 Tax=S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 1.0E-15
score: 68.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 1.2E-15
score: 56.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..94
e-value: 5.7E-34
score: 117.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..94
e-value: 1.2E-45
score: 151.4
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 2..94
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig56contigP-fluviatile_contig56:646919..647926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig56.12027.1mRNA_P-fluviatile_contig56.12027.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig56 646919..647926 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig56.12027.1 ID=prot_P-fluviatile_contig56.12027.1|Name=mRNA_P-fluviatile_contig56.12027.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=95bp
QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVHVVEAER
YPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf