prot_P-fluviatile_contig55.11886.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig55.11886.1
Unique Nameprot_P-fluviatile_contig55.11886.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length477
Homology
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BLAST of mRNA_P-fluviatile_contig55.11886.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.990e-23
Identity = 108/266 (40.60%), Postives = 133/266 (50.00%), Query Frame = 0 
Query:   11 NVGALLEWLIATNRITVSAASAPAXXXXXXXXXXXXXXXXXXXXXXXXXXLSSRLLDEWKADGCPGRRPVTARRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRSFIDALATDRLRGGDAGGTAAPTEGDVARAAXXXXXXGDAVAEAAGVESLVTGGQEAESKRPRTSPPPRPATDRVQYEICEIPGCKSASKFAVPTSATPTRCSRHKRDGMVERATRRKACDTCTSRKVKCDGAVPSCGPXXXXXXNCGYRVKQRSGPK 276
            N+GALLEW+I+TNR+TV     PA       XXXXXXXXXXXXXXXXX  LS+R L EW+A GCPGR   T+  A                               KR+F  A++T  L    AGG A           XXXXXX  A   +  +ES  T  ++     P    P +        E CE P CK  ++FA P S +PTRCSRH   GM+ +A  RKACD CT+RK +CD   P+CG        C Y  + +SGPK
Sbjct:   10 NLGALLEWMISTNRVTVP--DPPAMSEAAGAXXXXXXXXXXXXXXXXXSALSARFLKEWEAAGCPGRPSPTSTAA---------------------------GQKGKRTFDHAMSTHSLYTRHAGG-AXXXXXXXXXXXXXXXXXXXARRGSPMIESKGTFAKKMRKASPADRSPGK------DLESCEAPECKDFARFAPPASLSPTRCSRHAAGGMIAKAKPRKACDVCTARKTRCDSVRPTCGTCAAQFATCRYSARLKSGPK 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig55.11886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLU9_ECTSI4.990e-2340.60C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 232..276
e-value: 3.4E-6
score: 36.6
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 236..272
e-value: 4.3E-7
score: 29.9
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 237..265
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 237..267
score: 10.26
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 235..299
e-value: 8.6E-10
score: 40.9
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 232..273
NoneNo IPR availablePANTHERPTHR31069FAMILY NOT NAMEDcoord: 213..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig55contigP-fluviatile_contig55:168228..179184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig55.11886.1mRNA_P-fluviatile_contig55.11886.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig55 168220..179669 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig55.11886.1 ID=prot_P-fluviatile_contig55.11886.1|Name=mRNA_P-fluviatile_contig55.11886.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=477bp
MAEDQEVTGENVGALLEWLIATNRITVSAASAPAAAFPAGDKPAAAATPA
AAPAVSAASVLSSRLLDEWKADGCPGRRPVTARRAEQQQQQQHQQHQQGG
RSTAAAAEGSAAAAAAKRSFIDALATDRLRGGDAGGTAAPTEGDVARAAA
AAAAAGDAVAEAAGVESLVTGGQEAESKRPRTSPPPRPATDRVQYEICEI
PGCKSASKFAVPTSATPTRCSRHKRDGMVERATRRKACDTCTSRKVKCDG
AVPSCGPCTARRANCGYRVKQRSGPKPGFADARRAQAELAPAAAQSIFGR
RPVALARIGRPAAEVAATALAAVAAALGPPVAPTSLPRATGTPSSSSPSS
SSPSASPSLSSLNGQAHASAPALSAPAAATISAAVGDVGTGGGMAGAAAA
AAAAAASSALNGAFSPGAEAAASADSTAPPAPWRLRLSRDSDSTLPGRRR
RCLRPPPLSRRPLLPTCRRPLLLCWG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf