prot_P-fluviatile_contig55.11880.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig55.11880.1
Unique Nameprot_P-fluviatile_contig55.11880.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length162
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig55.11880.1 vs. uniprot
Match: D8LSU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU6_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.190e-65
Identity = 113/158 (71.52%), Postives = 124/158 (78.48%), Query Frame = 0 
Query:    4 KRRRAVLGLLAAGLAVASGKPAWGSDGEGLRNVKNGGAHVHMAG-PGRDDLGGDERIDFDRVSPMDCAAYLCVSSPDTAAYYIEDGCPGQFIDYEPFAT-DSALESLVGTSSTRGPPRGLSTGTLLSLACASGVFAVGVGFVAGYKASPSFAYMRIPS 159
            KRR AV+GLL AGLA ASGKPAWG+DGEGL+NVK+GG   H  G PG   L GD  +DFD VSP DCA YLCVSSPD A YYIE GCPGQF DYEP    +  ++S +G SS+ G   G+STGTLLSLACASGVFAVGVGFVAGYKASPSFAYMRIPS
Sbjct:    5 KRRAAVMGLLVAGLAFASGKPAWGTDGEGLKNVKSGG---HQKGAPGHKGLDGD-LLDFDSVSPKDCANYLCVSSPDKATYYIEAGCPGQFADYEPDRDPEEPVDSYLGFSSSAGASTGVSTGTLLSLACASGVFAVGVGFVAGYKASPSFAYMRIPS 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig55.11880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSU6_ECTSI4.190e-6571.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..125
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..146
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 147..161
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.717
NoneNo IPR availableTMHMMTMhelixcoord: 124..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig55contigP-fluviatile_contig55:118271..120072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig55.11880.1mRNA_P-fluviatile_contig55.11880.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig55 118243..121723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig55.11880.1 ID=prot_P-fluviatile_contig55.11880.1|Name=mRNA_P-fluviatile_contig55.11880.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
MLGKRRRAVLGLLAAGLAVASGKPAWGSDGEGLRNVKNGGAHVHMAGPGR
DDLGGDERIDFDRVSPMDCAAYLCVSSPDTAAYYIEDGCPGQFIDYEPFA
TDSALESLVGTSSTRGPPRGLSTGTLLSLACASGVFAVGVGFVAGYKASP
SFAYMRIPSST*
back to top