prot_P-fluviatile_contig52.11610.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig52.11610.1
Unique Nameprot_P-fluviatile_contig52.11610.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length76
Homology
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.960e-46
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDKKMGMVIIRGNSVVQFEILDPIRY 75
            MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPA+SDKKMGMVIIRGNSVVQFEILDP+R+
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.520e-28
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTD--PAASDKKMGMVIIRGNSVVQFEILDPIR 74
            GGPDLKRYMDK L LKLNGNR V+GVLRGYD FMN+VLDE  +    A ++ +GMV+IRGNSV++FE+LDP++
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.340e-26
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDKK-MGMVIIRGNSVVQFEILDPI 73
            GGPDLK+Y+DK L+ KLNGNR V GVLRG+D FMN+VLDET D  A DK  +G+V+IRGNSVVQFE L+ +
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.960e-26
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDK--KMGMVIIRGNSVVQFEILDPI 73
            GPDLKRYMDKTLS+KLNGNR V G+LRG+D FMN+ LD+T +  +  +  K+GMV+IRGNS+VQFE LD I
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 98.6 bits (244), Expect = 1.610e-25
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDP--AASDKKMGMVIIRGNSVVQFEILDPI 73
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +   A    ++GMV+IRGNS+VQFE L+ I
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.290e-25
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAAS--DKKMGMVIIRGNSVVQFEILDPI 73
            GPDLKRYMDK LSLKLNGNR V GVLRGYD FMN+ LDE  +  ++  + K+GMV+IRGNS+VQFE L+ +
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 97.4 bits (241), Expect = 9.280e-25
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDK--KMGMVIIRGNSVVQFEILDPI 73
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +  ++ +  ++GMV+IRGNS+VQFE L+ I
Sbjct:   31 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: UPI00145538F6 (small nuclear ribonucleoprotein G-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145538F6)

HSP 1 Score: 94.7 bits (234), Expect = 5.390e-24
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    6 PDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDKK--MGMVIIRGNSVVQFEILDPI 73
            P+LK++MDK LSLKLNGNR V G+LRG+DPFMNLV+DET + AA + K  +GMV+IRGNS++  E+L+ I
Sbjct:    7 PELKKFMDKKLSLKLNGNRRVTGILRGFDPFMNLVMDETVEDAAGNVKHDIGMVVIRGNSIILLEVLERI 76          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 94.4 bits (233), Expect = 7.650e-24
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0
Query:    6 PDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDKK--MGMVIIRGNSVVQFEILDPI 73
            P+LK+YMDK LSLKLNG R V GVLRGYDPFMNLVLDE  + A++ +K  +GMV+IRGNS+V  E LD I
Sbjct:    7 PELKKYMDKKLSLKLNGGRHVTGVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76          
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Match: A0A3S3P9N4_9ACAR (Small nuclear ribonucleoprotein G n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P9N4_9ACAR)

HSP 1 Score: 93.2 bits (230), Expect = 2.250e-23
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 0
Query:    6 PDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAASDKK--MGMVIIRGNSVVQFEILDPI 73
            P+LK+YMDK LSLKLNGNR V G+LRG+DPFMNLV+DE  +     +K  MGM++IRGNSVV  E LD I
Sbjct:    7 PELKKYMDKRLSLKLNGNRVVTGILRGFDPFMNLVIDEAIEETKKGEKIPMGMIVIRGNSVVLLEALDRI 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig52.11610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI3.960e-4696.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA1.520e-2867.12Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA1.340e-2667.61Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W4GJ25_9STRA3.960e-2666.20Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
H3G549_PHYRM1.610e-2567.61Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A024GIK4_9STRA2.290e-2566.20Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
A0A484EFX9_BRELC9.280e-2566.20Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
UPI00145538F65.390e-2462.86small nuclear ribonucleoprotein G-like n=1 Tax=Ast... [more]
A0A6P8J6H9_ACTTE7.650e-2467.14Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
A0A3S3P9N4_9ACAR2.250e-2364.29Small nuclear ribonucleoprotein G n=1 Tax=Dinothro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 6..69
e-value: 1.7E-18
score: 77.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..67
e-value: 7.5E-19
score: 67.2
NoneNo IPR availableGENE3D2.30.30.100coord: 3..73
e-value: 9.6E-22
score: 78.5
NoneNo IPR availablePANTHERPTHR10553:SF2SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 5..73
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 5..73
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig52contigP-fluviatile_contig52:814762..815929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig52.11610.1mRNA_P-fluviatile_contig52.11610.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig52 814762..816608 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig52.11610.1 ID=prot_P-fluviatile_contig52.11610.1|Name=mRNA_P-fluviatile_contig52.11610.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPAAS
DKKMGMVIIRGNSVVQFEILDPIRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf