prot_P-fluviatile_contig21.4659.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig21.4659.1
Unique Nameprot_P-fluviatile_contig21.4659.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length568
Homology
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BLAST of mRNA_P-fluviatile_contig21.4659.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 535 bits (1379), Expect = 1.800e-183
Identity = 319/544 (58.64%), Postives = 374/544 (68.75%), Query Frame = 0 
Query:    2 SFQVPAVPRGLLLPGLDTYELREEE-LPT-PTPPGSHWLFRPPPFISWADCKAETVNIENPSAWTRTSLDGYTLSDGLRRHTYHFPKGCSLPARRSLTLYCCPGKLPEGAVANLPRNVLLWKNQDGSLRKKEVVDSTGETLVLADKRGKEVAVLEIPCEDDDKGRQMKRLPGVKRARVLALRTLVLSLCYLRLTFTGLAAAWVTVNPDVFLLFTGLAHVTDFLSRRCASSQPGAPMDGFAVVLATTGDRLTALILLGSLVLLDSDPRHCQIFAGMLALDITANWLQLSVASSAGGPDPLAGGVLVRGKGSAAPDFLTHLMLSQPLALTLVSLGNEAFLLWSYIVASSPLPPGLGMMAARAGGGFSSLFRWLSDAASSPGGEMAVKAGASISSWFTDAVSFVLSVYSSPSPSSSPSAEEATSPQFLFAGETDAESAGSGRGEVGGGFGYLEPTRFDLGRVGL-EDRLVRGSDGGGAEGIEGASSETAAAAATVWKAVWMALMVCCAVRQLLSCIQVLISMSTLSSGVITNAAGQDLQRCKPRTRR 542
            +F VP+VPR LLLPGLDT++++EE+ +PT PTPPGSHWLFRPPPFI+ AD +AETV I NPS W   +L GYTL+D L+RHTYHFP+   L AR SLTLYCCPGK  EGA+ NLP+  LLW NQDGSLR+KEV++++GETLVL+D +G EVAVLE+P  D ++    + LPGVKR++VLALRTLVLSLCYLRL  TGLAAA VTV+PDVFLL T LAHV D LSR  ASS+PG PMD F VVLAT GDR + L+LLGSLVLLD DPRH QIF GMLALD+TANWLQLSVAS + G  PLAG  LV G+G AAPDF TH+ML+ P+ LTLVSLG+EAFL+WSY+VASS LP GL  M A+AG   SSLF  L                  +SS+             SPS                               E GG FG  EP R D   +GL ED  VR ++  G    +G+   TA      WKAVWM LMVCCA RQLLSCIQ LISMS+LSSGVI +AAG+D+QR  PR+RR
Sbjct:    5 AFHVPSVPRSLLLPGLDTHQVQEEDDVPTDPTPPGSHWLFRPPPFIAHADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVLRARTSLTLYCCPGKFSEGALHNLPQPFLLWHNQDGSLRRKEVMENSGETLVLSDAKGNEVAVLEVPGTDGEE--TSRTLPGVKRSQVLALRTLVLSLCYLRLVCTGLAAARVTVHPDVFLLVTALAHVFDILSR-WASSRPGVPMDDFGVVLATMGDRFSYLVLLGSLVLLDKDPRHSQIFGGMLALDMTANWLQLSVASISNGSHPLAG-TLVSGRG-AAPDFATHIMLTHPVELTLVSLGSEAFLVWSYLVASSDLPLGLRAMVAKAGDFLSSLFTEL------------------LSSF-------------SPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGGVFGGFEPNRIDSAALGLGEDLGVREAEDDG----DGSPFSTA------WKAVWMTLMVCCAARQLLSCIQALISMSSLSSGVIADAAGKDMQRRHPRSRR 502
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4659.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI1.800e-18358.64LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..261
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 262..568
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 203..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..227
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..238
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..202
IPR036415Lamin tail domain superfamilySUPERFAMILY74853Lamin A/C globular tail domaincoord: 31..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:2108629..2117847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4659.1mRNA_P-fluviatile_contig21.4659.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig21 2108629..2118163 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig21.4659.1 ID=prot_P-fluviatile_contig21.4659.1|Name=mRNA_P-fluviatile_contig21.4659.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=568bp
MSFQVPAVPRGLLLPGLDTYELREEELPTPTPPGSHWLFRPPPFISWADC
KAETVNIENPSAWTRTSLDGYTLSDGLRRHTYHFPKGCSLPARRSLTLYC
CPGKLPEGAVANLPRNVLLWKNQDGSLRKKEVVDSTGETLVLADKRGKEV
AVLEIPCEDDDKGRQMKRLPGVKRARVLALRTLVLSLCYLRLTFTGLAAA
WVTVNPDVFLLFTGLAHVTDFLSRRCASSQPGAPMDGFAVVLATTGDRLT
ALILLGSLVLLDSDPRHCQIFAGMLALDITANWLQLSVASSAGGPDPLAG
GVLVRGKGSAAPDFLTHLMLSQPLALTLVSLGNEAFLLWSYIVASSPLPP
GLGMMAARAGGGFSSLFRWLSDAASSPGGEMAVKAGASISSWFTDAVSFV
LSVYSSPSPSSSPSAEEATSPQFLFAGETDAESAGSGRGEVGGGFGYLEP
TRFDLGRVGLEDRLVRGSDGGGAEGIEGASSETAAAAATVWKAVWMALMV
CCAVRQLLSCIQVLISMSTLSSGVITNAAGQDLQRCKPRTRRGRTVENGG
GVGGTGSRDGSSSSRSNR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036415Lamin_tail_dom_sf