prot_P-fluviatile_contig14.2134.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig14.2134.1
Unique Nameprot_P-fluviatile_contig14.2134.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length563
Homology
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BLAST of mRNA_P-fluviatile_contig14.2134.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 8.340e-126
Identity = 268/426 (62.91%), Postives = 320/426 (75.12%), Query Frame = 0 
Query:  149 MSSVRSDGWVYAAGRPRTRGSSFE---VKLNTGDC---PTSSG-NCGREREAEIPTLGSLCLRSLESSLGKGLATFDFQDLPLGLCQLIYQFVSSKGSRMANMEVLKALAPVLRHHVISLDFSRVKVLGDSALLELAGGCDSSLMELDLSACYFVTDSGLLATLVRCPYLTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNDGVACIAFLPALEELCLARCNVSDSAIISLAAGPSSQTLRRLDLSGTATKGQGLASLRSXXXXXXXXXXXXXXXLSVMTVAALARDLRLPVCLPEAPKTRGKCNRSLLAGSEWSERQLSCLRSKRPAE-----AEPPAQSWQNSASTICCARNSGPTKAMRLLGSAGRTFSSFAFSSSSDDVVKVKFQDGTIEEGGRQLLQSLIQGIVKLWPAVPSR 562
            M+ VRS+ WV    R R RG SF+   V++N  D    P SSG   G ERE EIPTLG LCLRSLESSLGKGLATFD QDLPLGL + +Y FV+S GSRMA+ME+L+ALAP+LR HV SLDFSR K++GDSALLELA GCDSSL++L+LS+C F+TD  LLATL++CP + D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVA IA+LPALE+LCLARCNVSD+A++++  G   Q+LR LDL+ TA      ASLR      XXXXXXXXXX     VAALARDLRLP  LPEAPKTR + +R+LL GS+WSE QL  L  KR A      A  PA+SW+NS +++ C    GP+KAMRL+G+A R  SS + S  +DD+V+V F+D  IEEGGR+LL +L+QGIV+LWPAVPSR
Sbjct:    1 MNFVRSNEWVS---RRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXX--VAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSS-SPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI8.340e-12662.91Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 410..433
e-value: 710.0
score: 0.1
coord: 282..307
e-value: 16.0
score: 12.9
coord: 334..359
e-value: 7.7
score: 15.4
coord: 360..383
e-value: 8.0
score: 15.3
coord: 308..333
e-value: 0.011
score: 24.9
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 334..357
e-value: 0.16
score: 12.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 234..330
e-value: 4.5E-13
score: 50.9
coord: 331..438
e-value: 1.3E-13
score: 52.7
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 243..422
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 243..422
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 252..421

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1229626..1232671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2134.1mRNA_P-fluviatile_contig14.2134.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig14 1228845..1232930 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig14.2134.1 ID=prot_P-fluviatile_contig14.2134.1|Name=mRNA_P-fluviatile_contig14.2134.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=563bp
MRDQVASNPEANSTSKSLVAERLKAGLNAGQSRTLRAMGRRLNVCHGAYL
DSDPEACPPHLRHLSVGPLTRRTSEKKKKNLTNGKFARVNPLKVYFSAWS
GSALPIHQCYAEIITHTNPIPALPALLRSVPTATVYARPDSDCVCTEGMS
SVRSDGWVYAAGRPRTRGSSFEVKLNTGDCPTSSGNCGREREAEIPTLGS
LCLRSLESSLGKGLATFDFQDLPLGLCQLIYQFVSSKGSRMANMEVLKAL
APVLRHHVISLDFSRVKVLGDSALLELAGGCDSSLMELDLSACYFVTDSG
LLATLVRCPYLTDLTLSGCRQISDQTAFHLSHRCTGLTTLNLAGLQELTN
DGVACIAFLPALEELCLARCNVSDSAIISLAAGPSSQTLRRLDLSGTATK
GQGLASLRSLRKLEYLALSSTSSCLSVMTVAALARDLRLPVCLPEAPKTR
GKCNRSLLAGSEWSERQLSCLRSKRPAEAEPPAQSWQNSASTICCARNSG
PTKAMRLLGSAGRTFSSFAFSSSSDDVVKVKFQDGTIEEGGRQLLQSLIQ
GIVKLWPAVPSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf