prot_P-fluviatile_contig1.230.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig1.230.1
Unique Nameprot_P-fluviatile_contig1.230.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length752
Homology
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BLAST of mRNA_P-fluviatile_contig1.230.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 1.020e-96
Identity = 406/714 (56.86%), Postives = 459/714 (64.29%), Query Frame = 0 
Query:   84 TVDGTTGMRASERRASS--AAVSVAELPSDAPAGGRRLQDRHQHRMAGSVLGDCRLRRRLRKLGKLGKPLNVLESLAVAKQRGDVISLRVFNTAVAAVAPCEDGWQYAMRLLALMQEEQVAPDRFTLSAIVASCLRGHEWNMAHGVLQKMQRQGMRPLDMRPGRLTTAPGEAGEARDRVMRLLQRLRSTDDPRPPAAPSPSWEKRQAAGAGDEDGDCGDGYGDGGDITGQHSVRSADGMVACDDG-GARQRRGNSDE--RETGTAISDVISRNGAATVVDGRGSGGGNDGGGRGERGGAWDVLGLERDEGRD--------------------------------------KAADELRAVGLR------PTEEVFLSQLKAAAKTKNWEGALRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAASCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKADEAIKASSLLLQMRAARGVSTNMSSYRAVINALCRAGDWASAQGLLEDARKDQLKPGAGELRVMLEAYGKAGQHERALSLLEEMRSEGMNLRRTGERLWWVFDTCRDKRVKDRAWLLMEVEKTRERVRLRAERNARRVTTTASAAVVTA 748
            T   T   R +ERR +S  A V+V +L  +     RR   R QH     V  +CRLRR LRKLG L +P NVLE LA AK RGD +SLRVFN A+ AVAPCE+G ++A+RLL LMQEE++APDRFTL+AIVASCLR  +W++AHGVL+KM+ QGMRPLD+RP RLTTAPGEAGEARDRV RLL+RLRS D   P     P  + R+       D    D          Q  V+S   + +   G GAR    NS    R  GT      S  G+A +V+                  A     +E  + +                                        AAD    VG+       P E+ FLS+LKAAA TK+WE AL LL                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          SLLLQM +A GVSTNMSS+RA ++A CRAGDWASA  LLEDAR+ QLKP   +LR M+EA GKA QHERALSLLEEMRSEGMNLRRTGE+LWWVF+TCRDK+VK+RAW+LMEVE+TRERVRLRAERNA++     S A   A
Sbjct:    2 TTVATPDQRPTERRTTSGVADVTVDKLDGELQQQRRR---RRQHDSVAGVSAECRLRRELRKLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAAITAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWDVAHGVLEKMELQGMRPLDLRPSRLTTAPGEAGEARDRVRRLLERLRSADLG-PEEGLRPPDQLRKGGXXXXXDFTVRDFR--------QRRVKSVVRVTSGKGGKGARPSENNSRGTFRHVGTTA--ASSPAGSAVLVEVPPK--------------ALSSFRMENCKFQSTSCRRFSENILPPLREAYLKETSKNLTSSPTFSNAVASSAADGDDKVGVLLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMREAGYAPHPGAYACAIRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNAQKAAAEESEAAAAA 681
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI1.020e-9656.86PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 512..543
e-value: 8.0E-5
score: 20.6
coord: 553..586
e-value: 1.0E-5
score: 23.4
coord: 662..688
e-value: 2.5E-5
score: 22.2
coord: 443..474
e-value: 1.1E-4
score: 20.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 445..471
e-value: 0.7
score: 10.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 621..655
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 168..203
score: 6.741
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 474..508
score: 6.401
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 585..619
score: 6.018
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 204..238
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 656..690
score: 9.328
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 509..543
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 404..438
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 439..473
score: 9.635
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 550..584
score: 10.622
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 515..742
e-value: 4.9E-42
score: 146.3
coord: 134..242
e-value: 7.7E-12
score: 47.2
coord: 385..514
e-value: 1.9E-22
score: 82.0
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 508..686
e-value: 6.5E-15
score: 55.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 161..238
coord: 394..473
coord: 480..689
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..751
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2884938..2890775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.230.1mRNA_P-fluviatile_contig1.230.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig1 2884895..2891223 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig1.230.1 ID=prot_P-fluviatile_contig1.230.1|Name=mRNA_P-fluviatile_contig1.230.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=752bp
MGRETMKRLRSAMNLILFAIPAAGGALSFIVVPPSGAVTITTPDMEEGLC
GGHRLRHSGGCCSVRKIRCSRGGRQKNSMQMGATVDGTTGMRASERRASS
AAVSVAELPSDAPAGGRRLQDRHQHRMAGSVLGDCRLRRRLRKLGKLGKP
LNVLESLAVAKQRGDVISLRVFNTAVAAVAPCEDGWQYAMRLLALMQEEQ
VAPDRFTLSAIVASCLRGHEWNMAHGVLQKMQRQGMRPLDMRPGRLTTAP
GEAGEARDRVMRLLQRLRSTDDPRPPAAPSPSWEKRQAAGAGDEDGDCGD
GYGDGGDITGQHSVRSADGMVACDDGGARQRRGNSDERETGTAISDVISR
NGAATVVDGRGSGGGNDGGGRGERGGAWDVLGLERDEGRDKAADELRAVG
LRPTEEVFLSQLKAAAKTKNWEGALRLLDGMREAGYRPRPGAYACAMRAC
GKARKWEQSLALMDDLRSRGVEPGEGCNVMALKACADAGLWEKTLEMLKD
MSTQGVNRSESTFVVAMKACGDAGRWKEALVLMDDMRKGGIPPMEITYTT
AASCCCAMKACGNAGAWEQALKLLQEMQDMGIPPTEQCFTAAIRACAKAD
EAIKASSLLLQMRAARGVSTNMSSYRAVINALCRAGDWASAQGLLEDARK
DQLKPGAGELRVMLEAYGKAGQHERALSLLEEMRSEGMNLRRTGERLWWV
FDTCRDKRVKDRAWLLMEVEKTRERVRLRAERNARRVTTTASAAVVTATF
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long