mRNA_P-fluviatile_contig99.15518.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig99.15518.1
Unique NamemRNA_P-fluviatile_contig99.15518.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig99.15518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig99contigP-fluviatile_contig99:51118..51504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.5852594-CDS-P-fluviatile_contig99:51117..515041622817362.5852594-CDS-P-fluviatile_contig99:51117..51504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig99 51118..51504 -
1693572247.776372-CDS-P-fluviatile_contig99:51117..515041693572247.776372-CDS-P-fluviatile_contig99:51117..51504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig99 51118..51504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig99.15518.1prot_P-fluviatile_contig99.15518.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig99 51118..51504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig99.15518.1

>prot_P-fluviatile_contig99.15518.1 ID=prot_P-fluviatile_contig99.15518.1|Name=mRNA_P-fluviatile_contig99.15518.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
WHVDSGASGSVTRSSRMMTNFRPYNKLVAGPDNVTHQIKGRGNIAVDLKS
DVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTG
EQLLMRPDNDLYVSYGRRVDGEVETACAV
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mRNA from alignment at P-fluviatile_contig99:51118..51504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig99.15518.1 ID=mRNA_P-fluviatile_contig99.15518.1|Name=mRNA_P-fluviatile_contig99.15518.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=387bp|location=Sequence derived from alignment at P-fluviatile_contig99:51118..51504- (Porterinema fluviatile SAG_2381)
TGGCACGTTGACTCTGGGGCTTCAGGCTCCGTGACGCGTAGCTCCAGGAT
GATGACCAACTTCCGACCGTACAACAAGCTAGTTGCAGGTCCAGACAATG
TCACTCACCAGATTAAAGGCAGAGGTAACATAGCCGTCGACCTTAAGTCT
GATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCCAC
GTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACAAGGGTACA
AATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAAAGTCGACCGGA
GAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCATACGGCCG
CAGAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig99:51118..51504-

>mRNA_P-fluviatile_contig99.15518.1 ID=mRNA_P-fluviatile_contig99.15518.1|Name=mRNA_P-fluviatile_contig99.15518.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig99:51118..51504- (Porterinema fluviatile SAG_2381)
TGGCACGTTGACTCTGGGGCTTCAGGCTCCGTGACGCGTAGCTCCAGGAT
GATGACCAACTTCCGACCGTACAACAAGCTAGTTGCAGGTCCAGACAATG
TCACTCACCAGATTAAAGGCAGAGGTAACATAGCCGTCGACCTTAAGTCT
GATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCCAC
GTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACAAGGGTACA
AATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAAAGTCGACCGGA
GAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCATACGGCCG
CAGAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTGTGGCACGTTGACT
CTGGGGCTTCAGGCTCCGTGACGCGTAGCTCCAGGATGATGACCAACTTC
CGACCGTACAACAAGCTAGTTGCAGGTCCAGACAATGTCACTCACCAGAT
TAAAGGCAGAGGTAACATAGCCGTCGACCTTAAGTCTGATGTGGGGTCAA
TGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCCACGTTTGCCTACAAT
CTGCTCTCCATGTCCCAGTGCGTGCGACAAGGGTACAAATTCGAAACCGA
TGACCCCGGTATGCTCGTCACTAAAAAGTCGACCGGAGAACAACTACTGA
TGCGCCCCGACAATGACTTATATGTCTCATACGGCCGCAGAGTTGATGGT
GAGGTAGAAACAGCCTGCGCCGTG
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