mRNA_P-fluviatile_contig97.15509.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig97.15509.1
Unique NamemRNA_P-fluviatile_contig97.15509.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig97.15509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig97contigP-fluviatile_contig97:22329..22535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.4523551-CDS-P-fluviatile_contig97:22329..224171622817361.4523551-CDS-P-fluviatile_contig97:22329..22417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig97 22330..22417 -
1693572243.1015253-CDS-P-fluviatile_contig97:22329..224171693572243.1015253-CDS-P-fluviatile_contig97:22329..22417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig97 22330..22417 -
1622817361.465839-CDS-P-fluviatile_contig97:22449..225351622817361.465839-CDS-P-fluviatile_contig97:22449..22535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig97 22450..22535 -
1693572243.1134183-CDS-P-fluviatile_contig97:22449..225351693572243.1134183-CDS-P-fluviatile_contig97:22449..22535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig97 22450..22535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig97.15509.1prot_P-fluviatile_contig97.15509.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig97 22330..22535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig97.15509.1

>prot_P-fluviatile_contig97.15509.1 ID=prot_P-fluviatile_contig97.15509.1|Name=mRNA_P-fluviatile_contig97.15509.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
RQLQNRALQGGRRLVPDRQVVPVGLKLLNPSVLKSSGRSNPLPLYRATNS
AFTSCLTS
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mRNA from alignment at P-fluviatile_contig97:22329..22535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig97.15509.1 ID=mRNA_P-fluviatile_contig97.15509.1|Name=mRNA_P-fluviatile_contig97.15509.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=207bp|location=Sequence derived from alignment at P-fluviatile_contig97:22329..22535- (Porterinema fluviatile SAG_2381)
AGGCAGCTGCAGAACCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGA
CCGACAGGTGGTGCCCGTCGGCCTCAAGCTCCTGAAGTATCTCGTTCATC
AGGGCCTCATCTTCGCAGCCCTTCCGTGCTCAAGAGCTCCGGGAGGTCGA
ATCCACTGCCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTGCTTG
ACTTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig97:22329..22535-

>mRNA_P-fluviatile_contig97.15509.1 ID=mRNA_P-fluviatile_contig97.15509.1|Name=mRNA_P-fluviatile_contig97.15509.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig97:22329..22535- (Porterinema fluviatile SAG_2381)
AGGCAGCTGCAGAACCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGA
CCGACAGGTGGTGCCCGTCGGCCTCAAGCTCCTGAAAGGCAGCTGCAGAA
CCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGACCGACAGGTGGTGC
CCGTCGGCCTCAAGCTCCTGAACCCTTCCGTGCTCAAGAGCTCCGGGAGG
TCGAATCCACTGCCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTG
CTTGACTTCACCCTTCCGTGCTCAAGAGCTCCGGGAGGTCGAATCCACTG
CCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTGCTTGACTTCA
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