mRNA_P-fluviatile_contig94.15465.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig94.15465.1
Unique NamemRNA_P-fluviatile_contig94.15465.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig94.15465.1 vs. uniprot
Match: D8LPE1_ECTSI (Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPE1_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.940e-42
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 MEEVLSVTEAVEMCDNDEEFMKEMVVLMREDLVSCLDLLADAFRTKNSTQMKEISHRVKGQAANMAAKELWKWSKKVEDAAGAGVCTRSEYLRLVLSIKEFVRCTRNV 324
            ME VL + E V MCDNDE FMKEMVVLMR D+V CL LLA+AF   N  + +E++HRVKGQAA+MAAK+L   SKKVEDAA  G CT++EYL LVLS+KEFVRCTR++
Sbjct:    1 MENVLCIQETVAMCDNDEIFMKEMVVLMRNDIVECLSLLAEAFNNNNPARTREVAHRVKGQAASMAAKDLMLHSKKVEDAAKIGFCTKTEYLSLVLSMKEFVRCTRDI 108
[Close]
BLAST of mRNA_P-fluviatile_contig94.15465.1 vs. uniprot
Match: Q8QNG6_ESV1K (EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG6_ESV1K)

HSP 1 Score: 137 bits (344), Expect = 9.230e-40
Identity = 69/108 (63.89%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 MEEVLSVTEAVEMCDNDEEFMKEMVVLMREDLVSCLDLLADAFRTKNSTQMKEISHRVKGQAANMAAKELWKWSKKVEDAAGAGVCTRSEYLRLVLSIKEFVRCTRNV 324
            ME+VL V  A+EMCDNDEEF+KEMV LMR+D++ CL LLA+AF   +S++ +E++HRVKGQAA +AAK+L   SKKVEDAA  G CT++EYL LVL++KEFVRCT++V
Sbjct:    1 MEKVLCVKGALEMCDNDEEFLKEMVGLMRDDIMKCLSLLAEAFDDNDSSRTREVAHRVKGQAAMLAAKDLLLQSKKVEDAAKIGFCTKTEYLSLVLNMKEFVRCTKDV 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig94.15465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPE1_ECTSI4.940e-4266.67Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus s... [more]
Q8QNG6_ESV1K9.230e-4063.89EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig94contigP-fluviatile_contig94:47175..47504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-113 Hpt domain protein
Ec32 orthologEc-06_005700.1
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.7830732-CDS-P-fluviatile_contig94:47174..475041622817359.7830732-CDS-P-fluviatile_contig94:47174..47504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig94 47175..47504 -
1693572233.6458051-CDS-P-fluviatile_contig94:47174..475041693572233.6458051-CDS-P-fluviatile_contig94:47174..47504Porterinema fluviatile SAG_2381CDSP-fluviatile_contig94 47175..47504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig94.15465.1prot_P-fluviatile_contig94.15465.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig94 47175..47504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig94.15465.1

>prot_P-fluviatile_contig94.15465.1 ID=prot_P-fluviatile_contig94.15465.1|Name=mRNA_P-fluviatile_contig94.15465.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
MEEVLSVTEAVEMCDNDEEFMKEMVVLMREDLVSCLDLLADAFRTKNSTQ
MKEISHRVKGQAANMAAKELWKWSKKVEDAAGAGVCTRSEYLRLVLSIKE
FVRCTRNVS*
back to top

mRNA from alignment at P-fluviatile_contig94:47175..47504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig94.15465.1 ID=mRNA_P-fluviatile_contig94.15465.1|Name=mRNA_P-fluviatile_contig94.15465.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig94:47175..47504- (Porterinema fluviatile SAG_2381)
ATGGAAGAGGTGCTGTCGGTCACAGAAGCGGTCGAGATGTGCGACAACGA
CGAAGAATTCATGAAAGAGATGGTGGTGCTCATGCGCGAAGATCTCGTGT
CTTGCCTCGATCTGCTGGCGGATGCCTTCCGCACAAAAAACAGCACGCAG
ATGAAAGAGATTTCCCACCGAGTCAAGGGCCAGGCGGCCAACATGGCGGC
GAAAGAGCTGTGGAAATGGTCCAAAAAGGTGGAAGACGCCGCGGGAGCGG
GGGTTTGCACAAGATCAGAGTACCTCCGGCTCGTACTCAGCATCAAGGAG
TTCGTCAGGTGCACGCGAAATGTCTCGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig94:47175..47504-

>mRNA_P-fluviatile_contig94.15465.1 ID=mRNA_P-fluviatile_contig94.15465.1|Name=mRNA_P-fluviatile_contig94.15465.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig94:47175..47504- (Porterinema fluviatile SAG_2381)
ATGGAAGAGGTGCTGTCGGTCACAGAAGCGGTCGAGATGTGCGACAACGA
CGAAGAATTCATGAAAGAGATGGTGGTGCTCATGCGCGAAGATCTCGTGT
CTTGCCTCGATCTGCTGGCGGATGCCTTCCGCACAAAAAACAGCACGCAG
ATGAAAGAGATTTCCCACCGAGTCAAGGGCCAGGCGGCCAACATGGCGGC
GAAAGAGCTGTGGAAATGGTCCAAAAAGGTGGAAGACGCCGCGGGAGCGG
GGGTTTGCACAAGATCAGAGTACCTCCGGCTCGTACTCAGCATCAAGGAG
TTCGTCAGGTGCACGCGAAATGTCTCGTGAATGGAAGAGGTGCTGTCGGT
CACAGAAGCGGTCGAGATGTGCGACAACGACGAAGAATTCATGAAAGAGA
TGGTGGTGCTCATGCGCGAAGATCTCGTGTCTTGCCTCGATCTGCTGGCG
GATGCCTTCCGCACAAAAAACAGCACGCAGATGAAAGAGATTTCCCACCG
AGTCAAGGGCCAGGCGGCCAACATGGCGGCGAAAGAGCTGTGGAAATGGT
CCAAAAAGGTGGAAGACGCCGCGGGAGCGGGGGTTTGCACAAGATCAGAG
TACCTCCGGCTCGTACTCAGCATCAAGGAGTTCGTCAGGTGCACGCGAAA
TGTCTCGTGA
back to top