mRNA_P-fluviatile_contig90.15431.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig90.15431.1
Unique Name	mRNA_P-fluviatile_contig90.15431.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5L4J7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.260e-37
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLEDFLMAANTANLLELFEEGG +
Sbjct:   74 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDFLMAANTANLLELFEEGGAE 152

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5JVS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.930e-36
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F S SVGYQSVKYTAPTFSGDA+SFSSWLEDFLMAANTANLLELFEEGG +
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSTSVGYQSVKYTAPTFSGDAKSFSSWLEDFLMAANTANLLELFEEGGAE 190

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5JN77_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN77_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.370e-35
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEE 285
            G  PQEVRVAAAHNQ  FSSA+GSGAA+FDSASVGYQSVKYTAPTFSGDA+SFSSWLEDFLMAANTANLLELFEE
Sbjct:  191 GSDPQEVRVAAAHNQACFSSAMGSGAAVFDSASVGYQSVKYTAPTFSGDAKSFSSWLEDFLMAANTANLLELFEE 265

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5KWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.240e-34
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLEDFLMAANTANLLELFEEGG +
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDFLMAANTANLLELFEEGGAE 190

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5J739_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J739_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.390e-34
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLEDF MAANTANLLELFEEGGG+
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDFFMAANTANLLELFEEGGGE 190

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5KZG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG8_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.410e-34
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLED LMAANTANLLELFEEGG +
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDLLMAANTANLLELFEEGGAE 190

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5L3W3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.510e-34
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGG 291
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLEDF MAANTA LLELFE+GG
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDFFMAANTAILLELFEQGG 188

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5KNA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.090e-34
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1

Query:   70 PQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGY+SVKYTAPTFSGDA+SF SWLEDFLMAANTANLLELFEEGG +
Sbjct:   76 PQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYKSVKYTAPTFSGDAKSFFSWLEDFLMAANTANLLELFEEGGAE 151

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5JZA0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.000e-34
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKY APTFSGDA+SFSSWLEDFLMAAN ANLLELFEEGG +
Sbjct:  112 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYPAPTFSGDAKSFSSWLEDFLMAANNANLLELFEEGGAE 190

[Close]

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Match: A0A6H5L6T6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.100e-34
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1

Query:   61 GLRPQEVRVAAAHNQGGFSSAIGSGAAIFDSASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGD 297
            G  PQEVRVAAAHNQ  FSSA+GSGAA+F SASVGYQSVKYTAPTFSGDA+SFSSWLEDFLMAANTANLLELFEEGG +
Sbjct:  346 GSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSVKYTAPTFSGDAKSFSSWLEDFLMAANTANLLELFEEGGAE 424

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig90.15431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L4J7_9PHAE	4.260e-37	87.34	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JVS5_9PHAE	9.930e-36	86.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN77_9PHAE	7.370e-35	90.67	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KWS2_9PHAE	1.240e-34	87.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J739_9PHAE	1.390e-34	87.34	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KZG8_9PHAE	2.410e-34	86.08	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3W3_9PHAE	2.510e-34	85.71	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNA8_9PHAE	3.090e-34	86.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZA0_9PHAE	4.000e-34	84.81	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L6T6_9PHAE	7.100e-34	87.34	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig90	contig	P-fluviatile_contig90:78473..78779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	309
Cds size	306
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817356.2261217-CDS-P-fluviatile_contig90:78472..78778	1622817356.2261217-CDS-P-fluviatile_contig90:78472..78778	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 78473..78778 +
1693572207.3082821-CDS-P-fluviatile_contig90:78472..78778	1693572207.3082821-CDS-P-fluviatile_contig90:78472..78778	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig90 78473..78778 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig90.15431.1	prot_P-fluviatile_contig90.15431.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig90 78473..78778 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig90:78473..78779+
coding sequence from alignment at P-fluviatile_contig90:78473..78779+

protein sequence of mRNA_P-fluviatile_contig90.15431.1

>prot_P-fluviatile_contig90.15431.1 ID=prot_P-fluviatile_contig90.15431.1|Name=mRNA_P-fluviatile_contig90.15431.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
RRQRTCEESLVLRDDTAAKQGLRPQEVRVAAAHNQGGFSSAIGSGAAIFD
SASVGYQSVKYTAPTFSGDARSFSSWLEDFLMAANTANLLELFEEGGGDP
RQ

mRNA from alignment at P-fluviatile_contig90:78473..78779+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig90.15431.1 ID=mRNA_P-fluviatile_contig90.15431.1|Name=mRNA_P-fluviatile_contig90.15431.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=307bp|location=Sequence derived from alignment at P-fluviatile_contig90:78473..78779+ (Porterinema fluviatile SAG_2381)
CGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCCTTCGGGACGACACAGC
GGCGAAGCAGGGGCTCAGACCCCAAGAGGTGAGAGTAGCCGCTGCTCACA
ATCAAGGTGGTTTCAGCAGCGCCATAGGAAGTGGTGCTGCTATCTTCGAT
AGTGCGAGCGTGGGATACCAAAGCGTGAAATACACAGCACCCACGTTCAG
CGGAGACGCCAGGAGTTTTTCTTCCTGGCTAGAGGATTTTCTGATGGCAG
CGAACACAGCAAACCTTCTTGAGCTTTTCGAGGAGGGGGGCGGAGATCCC
CGTCAAC

Coding sequence (CDS) from alignment at P-fluviatile_contig90:78473..78779+

>mRNA_P-fluviatile_contig90.15431.1 ID=mRNA_P-fluviatile_contig90.15431.1|Name=mRNA_P-fluviatile_contig90.15431.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig90:78473..78779+ (Porterinema fluviatile SAG_2381)
CGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCCTTCGGGACGACACAGC
GGCGAAGCAGGGGCTCAGACCCCAAGAGGTGAGAGTAGCCGCTGCTCACA
ATCAAGGTGGTTTCAGCAGCGCCATAGGAAGTGGTGCTGCTATCTTCGAT
AGTGCGAGCGTGGGATACCAAAGCGTGAAATACACAGCACCCACGTTCAG
CGGAGACGCCAGGAGTTTTTCTTCCTGGCTAGAGGATTTTCTGATGGCAG
CGAACACAGCAAACCTTCTTGAGCTTTTCGAGGAGGGGGGCGGAGATCCC
CGTCAACGCAGGCAGCGGACCTGCGAAGAGAGTCTGGTCCTTCGGGACGA
CACAGCGGCGAAGCAGGGGCTCAGACCCCAAGAGGTGAGAGTAGCCGCTG
CTCACAATCAAGGTGGTTTCAGCAGCGCCATAGGAAGTGGTGCTGCTATC
TTCGATAGTGCGAGCGTGGGATACCAAAGCGTGAAATACACAGCACCCAC
GTTCAGCGGAGACGCCAGGAGTTTTTCTTCCTGGCTAGAGGATTTTCTGA
TGGCAGCGAACACAGCAAACCTTCTTGAGCTTTTCGAGGAGGGGGGCGGA
GATCCCCGTCAA