mRNA_P-fluviatile_contig90.15427.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig90.15427.1
Unique NamemRNA_P-fluviatile_contig90.15427.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.680e-19
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SG++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 80.9 bits (198), Expect = 2.100e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SGV+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 8.440e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 9.580e-16
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 3.070e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 3.140e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 4.230e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 4.230e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1E1Y9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1Y9_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
[Close]
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Match: R1C158_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C158_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 2.290e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig90.15427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA2.680e-1971.70Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT2.100e-1871.70Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS8.440e-1874.51Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC9.580e-1668.63Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
R1EX34_EMIHU3.070e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU3.140e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU4.230e-1170.21Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU4.230e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1E1Y9_EMIHU1.930e-1070.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1C158_EMIHU2.290e-1070.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig90contigP-fluviatile_contig90:42418..42579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1e-12
Seed eggNOG ortholog35128.Thaps30335
EggNOG OGs2F8R5@1,2T9VT@2759,2XH3Y@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.3231335-CDS-P-fluviatile_contig90:42417..425791622817356.3231335-CDS-P-fluviatile_contig90:42417..42579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 42418..42579 -
1693572207.6708846-CDS-P-fluviatile_contig90:42417..425791693572207.6708846-CDS-P-fluviatile_contig90:42417..42579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 42418..42579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig90.15427.1prot_P-fluviatile_contig90.15427.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig90 42418..42579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig90.15427.1

>prot_P-fluviatile_contig90.15427.1 ID=prot_P-fluviatile_contig90.15427.1|Name=mRNA_P-fluviatile_contig90.15427.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQD
IRR*
back to top

mRNA from alignment at P-fluviatile_contig90:42418..42579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig90.15427.1 ID=mRNA_P-fluviatile_contig90.15427.1|Name=mRNA_P-fluviatile_contig90.15427.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=162bp|location=Sequence derived from alignment at P-fluviatile_contig90:42418..42579- (Porterinema fluviatile SAG_2381)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA
AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig90:42418..42579-

>mRNA_P-fluviatile_contig90.15427.1 ID=mRNA_P-fluviatile_contig90.15427.1|Name=mRNA_P-fluviatile_contig90.15427.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig90:42418..42579- (Porterinema fluviatile SAG_2381)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA
AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGAAGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAG
GCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGA
TTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGT
GGGAGCCAAGACATCCGTCGCTGA
back to top