mRNA_P-fluviatile_contig9.15383.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15383.1
Unique NamemRNA_P-fluviatile_contig9.15383.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.760e-104
Identity = 169/188 (89.89%), Postives = 172/188 (91.49%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGMVMLIHAAGGCRSRDLLVLAERAREINADRSHAAGSEAQGDGAS--CALGGPVQVQQQARRTVPGVLSG 558
            MPSTLSKLY AAA GSVERTVAVLSQGSV+IDGGYGD G+TPLM ASTMGYLRVVRVLLRLG RVSVADNDGATALHLSIVNKHLAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKGMVMLIHA GGC SRDLLVLAER  EINADRSHAAGSEAQGD AS  C LGGPVQVQQQ  RTVPGVLSG
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHA-GGCSSRDLLVLAERLGEINADRSHAAGSEAQGDEASGGCGLGGPVQVQQQGGRTVPGVLSG 187          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 6.130e-68
Identity = 114/125 (91.20%), Postives = 117/125 (93.60%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGMVMLIH 375
            MPSTLSKLY AAA GSVERTVAVLSQGSVDIDGGYGD G+TPLM ASTMGYLRVVRVLLR G RVSVADNDGATALHLSIV KHLAVS+AL+KAGA VEARGVDGTPLHVAAAKGFHKGMVMLIH
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH 125          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 8.060e-65
Identity = 118/132 (89.39%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGMVMLIHAAGGCRS 396
            MPSTLSKLYHA A GSVERTVAVLSQGSVDIDGGYGD G+TPLM A TMGYLRVVRVLLRLG RVSVADNDGATALHLSIVNKHLAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKGMVMLIHA     S
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.000e-40
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:   37 ARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGMVMLIHAAGGCRS 396
            ARGSVERTVA+LS+GSVDIDG YGD G+TPLMVASTMGYLRV RVLLRLG  VSVADNDGATALHLS+ N+HLAVSKALIKAGA+VEAR VDG              MV+LIHA     S
Sbjct:    5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHAGANVDS 110          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.620e-36
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 1
Query:  133 VASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHA 378
            VASTMGYLRVVRVLLRLG RVS ADNDGATALHLSIVNKHLAVSKAL+KAGAD+EAR       GV  TPLHVAAAKGFHKGMVMLIHA
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHA 125          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 7.500e-31
Identity = 75/125 (60.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEAR-GVDGTPLHVAAAKGFHKGMVMLI 372
            MPSTLSK     A GS++ T+A     +  ID G GD  QTPLMVAS +G  RVVR LLR G  VSVAD+DG TALH S+ + HLAVSK LI+AGAD+EAR G   TPLHVAA KGF +GM +L+
Sbjct:    1 MPSTLSK-----ASGSIDPTIA-----TTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM 115          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.080e-29
Identity = 77/144 (53.47%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 MPSTLSK-LYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEARG---------VDG-TPLHVAAAKGFHKGMVMLIHAAGGCRSR 399
            +PST S  LY AA+ GSVERT+ +LS G  +ID    + G T LM A+  GYLR+VRVLLR G  VSV+ +DG TALH +I  ++LAV+KALIKAGA+VEA+          V G TPLH+AA +GF +GMV LI+A     SR
Sbjct:   13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSR 156          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.120e-14
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  377 RQVDAGHAISWCWP---------SALEKSTPIVRMLPGLKRKATEPRVLLAALSRYNNKQDGPFLGYSPD 559
            RQ +A H++SW WP         ++ +K T I RM+P LKR+A +PRVLLAALSRYN KQDG FLGY P+
Sbjct:  411 RQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPE 480          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.030e-13
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  377 RQVDAGHAISWCWP---------SALEKSTPIVRMLPGLKRKATEPRVLLAALSRYNNKQDGPFLG 547
            RQ +A HA+SW WP         ++ +KST I RMLP LKR+A +PRVLLAA+SRYNNK DG FLG
Sbjct:  357 RQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422          
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.150e-10
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 2
Query:  452 MLPGLKRKATEPRVLLAALSRYNNKQDGPFLGYSPD 559
            MLP LK +A +PRVLLAA+SRYNNKQDGPFLGY P+
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPE 36          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G449_ECTSI1.760e-10489.89EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI6.130e-6891.20EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE8.060e-6589.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE6.000e-4072.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE6.620e-3685.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI7.500e-3160.00EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE8.080e-2953.47Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5L5L0_9PHAE3.120e-1455.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE1.030e-1359.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ25_ECTSI5.150e-1077.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:3423487..3424858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue3.6e-81
Seed eggNOG ortholog2880.D7G449
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-1
Ec32 orthologEc-03_003700.1
Exons3
Model size561
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15383.1prot_P-fluviatile_contig9.15383.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 3423487..3424858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.4662497-CDS-P-fluviatile_contig9:3423486..34235341622817351.4662497-CDS-P-fluviatile_contig9:3423486..3423534Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3423487..3423534 -
1693572188.0184672-CDS-P-fluviatile_contig9:3423486..34235341693572188.0184672-CDS-P-fluviatile_contig9:3423486..3423534Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3423487..3423534 -
1622817351.4774563-CDS-P-fluviatile_contig9:3423630..34237641622817351.4774563-CDS-P-fluviatile_contig9:3423630..3423764Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3423631..3423764 -
1693572188.0317876-CDS-P-fluviatile_contig9:3423630..34237641693572188.0317876-CDS-P-fluviatile_contig9:3423630..3423764Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3423631..3423764 -
1622817351.4889708-CDS-P-fluviatile_contig9:3424479..34248581622817351.4889708-CDS-P-fluviatile_contig9:3424479..3424858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3424480..3424858 -
1693572188.0429895-CDS-P-fluviatile_contig9:3424479..34248581693572188.0429895-CDS-P-fluviatile_contig9:3424479..3424858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3424480..3424858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15383.1

>prot_P-fluviatile_contig9.15383.1 ID=prot_P-fluviatile_contig9.15383.1|Name=mRNA_P-fluviatile_contig9.15383.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=187bp
MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMG
YLRVVRVLLRLGPRVSVADNDGATALHLSIVNKHLAVSKALIKAGADVEA
RGVDGTPLHVAAAKGFHKGMVMLIHAAGGCRSRDLLVLAERAREINADRS
HAAGSEAQGDGASCALGGPVQVQQQARRTVPGVLSG*
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mRNA from alignment at P-fluviatile_contig9:3423487..3424858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15383.1 ID=mRNA_P-fluviatile_contig9.15383.1|Name=mRNA_P-fluviatile_contig9.15383.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1372bp|location=Sequence derived from alignment at P-fluviatile_contig9:3423487..3424858- (Porterinema fluviatile SAG_2381)
ATGCCGTCAACTCTGAGCAAACTATATCATGCCGCAGCCCGTGGTTCCGT CGAGCGTACGGTTGCTGTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG GCTACGGTGATGGGGGCCAGACCCCTCTTATGGTGGCCTCCACCATGGGA TACTTGCGGGTCGTAAGGGTCCTCTTGAGACTGGGACCCCGGGTGTCGGT GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC ACCTGGCCGTCAGCAAGGCTCTGATTAAGGCGGGAGCGGACGTTGAAGCG CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA CAAAGGAATGGTGATGCTGATCCACGCGGGTGCGAATGTCGACAGTGAGC AAGAAGGCGGAGCGACACCCCTGTACATTTCGGCACGACAAGGGAGACTT GAAGATGTCAAAGTTCTCATTGGGGCGAAGGCGAATCCGCTCTTGCCTGC ATATGACGGCGAAAGCCTCCCGCTGGACGCGGCGGCTGAAAACGGACACC TGGAAGTTGTCCGCGAACTTGTACAGCGATTCGGAATCGACGGTTGTTCT CGTGACGGTGGCGCGCAAGCTCTCGTGGAGGCCGCTTCTCAGAATCAAAT AGATATCGTCACTTTTTTGTTTGACAACGGTGTGGTGGACGCGGAGGGCA TTGCACTGTGTGCTGCCGTGGAAGGCCGGCGTGAGGAGTGTGTCAAGCTC CTTCTGCAGAGACAGGGATGCAATGCGAACACCAGTACGCGTGCATACGC CAACATGGCCCACGACAGTACCTTGCCCATGTACTCAAACCAACTTTTCC AAGACACCCTCTTGTGAGCGCATTTGAGCTGGGGGGCTTCTATTCTCCCA GAATCACGCGCTTGCTCCTTGACGCCGGCGCGGACGTGGCATCGCGCGTT CGGTATGAAGGAATCGAAGGAGACTGTGTAATGCACGATACGCCCTTGGC GATCGCCGAATCGATTCTACCTTTGTGGGAGACCTGTGGAGAAACTTCGG AAGACGTGGAGTTCGGGCTGAAGGGTGTCACACGCTTGCTGAAGCAGGTG GATGCAGGTCACGCGATCTCCTGGTGTTGGCCGAGCGCGCTCGAGAAATC AACGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCGCAAGGCGACGGAGC CTCGTGTGCTCTTGGCGGCCCTGTCCAGGTGTGTGGTGTTGTTTTCGTTC GTCGGGTGCGATTGTAGGCAAGATTGTTAAAATACTGAGCTAAACCATAT TCTCCACCCGCCTCTTATCGACAGGTACAACAACAAGCAAGACGGACCGT TCCTGGGGTACTCTCCGGATAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:3423487..3424858-

>mRNA_P-fluviatile_contig9.15383.1 ID=mRNA_P-fluviatile_contig9.15383.1|Name=mRNA_P-fluviatile_contig9.15383.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1122bp|location=Sequence derived from alignment at P-fluviatile_contig9:3423487..3424858- (Porterinema fluviatile SAG_2381)
ATGCCGTCAACTCTGAGCAAACTATATCATGCCGCAGCCCGTGGTTCCGT
CGAGCGTACGGTTGCTGTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG
GCTACGGTGATGGGGGCCAGACCCCTCTTATGGTGGCCTCCACCATGGGA
TACTTGCGGGTCGTAAGGGTCCTCTTGAGACTGGGACCCCGGGTGTCGGT
GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC
ACCTGGCCGTCAGCAAGGCTCTGATTAAGGCGGGAGCGGACGTTGAAGCG
CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA
CAAAGGAATGGTGATGCTGATCCACGCGGATGCCGTCAACTCTGAGCAAA
CTATATCATGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCTGTGCT
TTCTCAAGGGTCGGTCGACATCGACGGAGGCTACGGTGATGGGGGCCAGA
CCCCTCTTATGGTGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGTC
CTCTTGAGACTGGGACCCCGGGTGTCGGTGGCGGACAATGACGGTGCGAC
TGCTCTACACCTGTCGATTGTCAACAAACACCTGGCCGTCAGCAAGGCTC
TGATTAAGGCGGGAGCGGACGTTGAAGCGCGTGGTGTAGACGGTACGCCG
CTTCACGTGGCCGCGGCGAAAGGATTCCACAAAGGAATGGTGATGCTGAT
CCACGCGGCAGGTGGATGCAGGTCACGCGATCTCCTGGTGTTGGCCGAGC
GCGCTCGAGAAATCAACGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCG
CAAGGCGACGGAGCCTCGTGTGCTCTTGGCGGCCCTGTCCAGCAGGTGGA
TGCAGGTCACGCGATCTCCTGGTGTTGGCCGAGCGCGCTCGAGAAATCAA
CGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCGCAAGGCGACGGAGCCT
CGTGTGCTCTTGGCGGCCCTGTCCAGGTACAACAACAAGCAAGACGGACC
GTTCCTGGGGTACTCTCCGGATAAGTACAACAACAAGCAAGACGGACCGT
TCCTGGGGTACTCTCCGGATAA
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