mRNA_P-fluviatile_contig9.15371.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15371.1
Unique NamemRNA_P-fluviatile_contig9.15371.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.490e-32
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG
Sbjct:  404 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 464          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.210e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFRGVSEVRGVGNEERRGGLLRVW+DCTCKLELKANDVLGLVEMETPHEMAAAG
Sbjct:  395 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWKDCTCKLELKANDVLGLVEMETPHEMAAAG 455          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.860e-31
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWE CTCKLELKAN+VLGLVEMETPHEMAAAG
Sbjct:  105 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEGCTCKLELKANEVLGLVEMETPHEMAAAG 165          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.990e-30
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFRG SEVRGVGNEERRGGL RVWEDCTC LELKANDVLGLVEMETPHEMAAAG
Sbjct:  106 LVLVTVRLFRGASEVRGVGNEERRGGLFRVWEDCTCNLELKANDVLGLVEMETPHEMAAAG 166          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.330e-28
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFRG SE R VGNEERRGGLLRVWE+CTCKLELKANDVL LVEMETPHE+AAAG
Sbjct:  285 LVLVTVRLFRGASEARSVGNEERRGGLLRVWENCTCKLELKANDVLELVEMETPHEIAAAG 345          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.140e-23
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTC--KLELKANDVLGLVEMETPHEMAAAG 183
            LV+VTVRLFRGVSEVRGV  EERRGGLLRVWEDCT   ++ELKA+ VLGLVEMETPHEMA AG
Sbjct:  474 LVIVTVRLFRGVSEVRGVRQEERRGGLLRVWEDCTADGEVELKADAVLGLVEMETPHEMAPAG 536          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.830e-17
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCT--CKLELKANDVLGLVEMETPHEMAAAG 183
            LVLVTVRLFR  +EVRGVG EERRGGLLRVWEDC+    +EL+A  VLGLVEMETP   +  G
Sbjct:  144 LVLVTVRLFRTAAEVRGVGEEERRGGLLRVWEDCSPGSGVELEAAKVLGLVEMETPQNRSGDG 206          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.930e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   25 FRGVSEVRGVGNEERRGGLLRVWEDCT--CKLELKANDVLGLVEMETPHEMAAAG 183
            F   +EVRGVG EERRGGLLRVWEDC+    +EL+A  VLGLVEMETP + +  G
Sbjct:  413 FGTAAEVRGVGEEERRGGLLRVWEDCSPGSGVELEAAKVLGLVEMETPQKSSGDG 467          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.810e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    4 VLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKAN--DVLGLVEMETPHEM 171
            V+ TVR FR V+EVR VG +E RGGL+R+WEDCT   E++ N  DVLGL E+ T  EM
Sbjct:  176 VVATVRGFRPVAEVRNVGQDETRGGLVRIWEDCTAGAEMQLNVADVLGLAEIYTADEM 233          
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Match: A0A6H5K941_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K941_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 7.220e-7
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1
Query:    4 VLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLE 117
            V+ TV  FR V+EVR VG  E RGGL+RVWEDCT   E
Sbjct:   57 VVATVSGFRPVAEVRNVGQAEMRGGLVRVWEDCTAGAE 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KJM6_9PHAE3.490e-32100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE1.210e-3198.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE7.860e-3196.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX6_9PHAE1.990e-3095.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE5.330e-2890.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.140e-2382.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML3_9PHAE1.830e-1769.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE4.930e-1263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9E1_9PHAE6.810e-1258.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K941_9PHAE7.220e-763.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:3357403..3357585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.7470105-CDS-P-fluviatile_contig9:3357402..33575851622817350.7470105-CDS-P-fluviatile_contig9:3357402..3357585Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3357403..3357585 +
1693572186.777313-CDS-P-fluviatile_contig9:3357402..33575851693572186.777313-CDS-P-fluviatile_contig9:3357402..3357585Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 3357403..3357585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15371.1prot_P-fluviatile_contig9.15371.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 3357403..3357585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15371.1

>prot_P-fluviatile_contig9.15371.1 ID=prot_P-fluviatile_contig9.15371.1|Name=mRNA_P-fluviatile_contig9.15371.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=61bp
LVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTCKLELKANDVLGLVE
METPHEMAAAG
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mRNA from alignment at P-fluviatile_contig9:3357403..3357585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15371.1 ID=mRNA_P-fluviatile_contig9.15371.1|Name=mRNA_P-fluviatile_contig9.15371.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=183bp|location=Sequence derived from alignment at P-fluviatile_contig9:3357403..3357585+ (Porterinema fluviatile SAG_2381)
TTGGTGCTAGTAACCGTGCGGCTGTTCAGGGGGGTGAGCGAGGTACGGGG CGTGGGGAATGAGGAGAGACGTGGCGGACTGTTACGGGTGTGGGAGGATT GCACCTGCAAACTGGAGTTGAAGGCCAACGACGTTCTGGGGCTGGTTGAG ATGGAGACGCCGCACGAGATGGCGGCAGCTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:3357403..3357585+

>mRNA_P-fluviatile_contig9.15371.1 ID=mRNA_P-fluviatile_contig9.15371.1|Name=mRNA_P-fluviatile_contig9.15371.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=366bp|location=Sequence derived from alignment at P-fluviatile_contig9:3357403..3357585+ (Porterinema fluviatile SAG_2381)
TTGGTGCTAGTAACCGTGCGGCTGTTCAGGGGGGTGAGCGAGGTACGGGG
CGTGGGGAATGAGGAGAGACGTGGCGGACTGTTACGGGTGTGGGAGGATT
GCACCTGCAAACTGGAGTTGAAGGCCAACGACGTTCTGGGGCTGGTTGAG
ATGGAGACGCCGCACGAGATGGCGGCAGCTGGCTTGGTGCTAGTAACCGT
GCGGCTGTTCAGGGGGGTGAGCGAGGTACGGGGCGTGGGGAATGAGGAGA
GACGTGGCGGACTGTTACGGGTGTGGGAGGATTGCACCTGCAAACTGGAG
TTGAAGGCCAACGACGTTCTGGGGCTGGTTGAGATGGAGACGCCGCACGA
GATGGCGGCAGCTGGC
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