mRNA_P-fluviatile_contig9.15257.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15257.1
Unique NamemRNA_P-fluviatile_contig9.15257.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15257.1 vs. uniprot
Match: D7G8I1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I1_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 8.060e-40
Identity = 127/292 (43.49%), Postives = 163/292 (55.82%), Query Frame = 3 
Query:   51 EALAAEVTPSLQPEEGSSSPTAGIDICGSSSSGITNGHASSAVTARTPSAVLAFVHVCGEPDGTTPDPGSCNAASRYRGYVPHSPISLSPGIEGGRDDEGVGGVDVPSTPAAAATLAEMMTAAXXXXXXXXXXXXXXEGSESSV--EGGPTKGKDESRASHEKSMLAVRQQA---QQRSTQPTHGTPSRRSTAGPRLPMVTPRRRKAASQLIDLSKATPRGMIRGILGGGDLPAHAWQPRYQ-HRRYVPQAAELGKTIEEETPRTLLRGVCAPGDAKDFVATGAKYNSTSTA 908
            E   A  TP+L     SS P + I          T  H ++A TA TP+AV A V + G        PGS  AA+RYRG++  SPI+LS   +    +EG    +VPSTPAAAATLA MM  A               GS+++   E G   GK++  AS E S +  +  A   Q+R+  P   TPSRR      LPM+TPRRRKAASQL+DLSKATPRGMIRG+L G   PA A Q ++Q H+R+VPQ A+L + +EEETPR LL+G C   D +      ++  STS A
Sbjct:  340 EGQGARATPTLLQRRTSSPPASEIAY--------TRDHTTTAHTACTPAAVSALVRMGGR-SVAAETPGSGTAANRYRGFIAQSPIALSATAKKECPEEGE--AEVPSTPAAAATLAAMMKGASAGVR----------GSDTTAAEEQGVIAGKNQGFASQEASEVRPKDVANLRQRRTAAPE--TPSRREGMSAGLPMITPRRRKAASQLLDLSKATPRGMIRGLLSGNGHPAQALQNKHQSHQRFVPQVAKLVENVEEETPRALLKGACVREDNR------SRCKSTSVA 602
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I1_ECTSI8.060e-4043.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:2352426..2355473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003100.1
Exons4
Model size1418
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15257.1prot_P-fluviatile_contig9.15257.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 2352513..2355447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.8499854-UTR-P-fluviatile_contig9:2352425..23525121622817337.8499854-UTR-P-fluviatile_contig9:2352425..2352512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2352426..2352512 -
1693572129.6390517-UTR-P-fluviatile_contig9:2352425..23525121693572129.6390517-UTR-P-fluviatile_contig9:2352425..2352512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2352426..2352512 -
1622817337.9042547-UTR-P-fluviatile_contig9:2355447..23554731622817337.9042547-UTR-P-fluviatile_contig9:2355447..2355473Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2355448..2355473 -
1693572129.9372702-UTR-P-fluviatile_contig9:2355447..23554731693572129.9372702-UTR-P-fluviatile_contig9:2355447..2355473Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2355448..2355473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.8614817-CDS-P-fluviatile_contig9:2352512..23527611622817337.8614817-CDS-P-fluviatile_contig9:2352512..2352761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2352513..2352761 -
1693572129.8611376-CDS-P-fluviatile_contig9:2352512..23527611693572129.8611376-CDS-P-fluviatile_contig9:2352512..2352761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2352513..2352761 -
1622817337.87186-CDS-P-fluviatile_contig9:2353106..23534821622817337.87186-CDS-P-fluviatile_contig9:2353106..2353482Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2353107..2353482 -
1693572129.8824413-CDS-P-fluviatile_contig9:2353106..23534821693572129.8824413-CDS-P-fluviatile_contig9:2353106..2353482Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2353107..2353482 -
1622817337.8828077-CDS-P-fluviatile_contig9:2354342..23544941622817337.8828077-CDS-P-fluviatile_contig9:2354342..2354494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2354343..2354494 -
1693572129.9029408-CDS-P-fluviatile_contig9:2354342..23544941693572129.9029408-CDS-P-fluviatile_contig9:2354342..2354494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2354343..2354494 -
1622817337.8931777-CDS-P-fluviatile_contig9:2354919..23554471622817337.8931777-CDS-P-fluviatile_contig9:2354919..2355447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2354920..2355447 -
1693572129.9194996-CDS-P-fluviatile_contig9:2354919..23554471693572129.9194996-CDS-P-fluviatile_contig9:2354919..2355447Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2354920..2355447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15257.1

>prot_P-fluviatile_contig9.15257.1 ID=prot_P-fluviatile_contig9.15257.1|Name=mRNA_P-fluviatile_contig9.15257.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=435bp
MDGNSGRVEALAAEVTPSLQPEEGSSSPTAGIDICGSSSSGITNGHASSA
VTARTPSAVLAFVHVCGEPDGTTPDPGSCNAASRYRGYVPHSPISLSPGI
EGGRDDEGVGGVDVPSTPAAAATLAEMMTAAGGNASGSGGIAAEEEGSES
SVEGGPTKGKDESRASHEKSMLAVRQQAQQRSTQPTHGTPSRRSTAGPRL
PMVTPRRRKAASQLIDLSKATPRGMIRGILGGGDLPAHAWQPRYQHRRYV
PQAAELGKTIEEETPRTLLRGVCAPGDAKDFVATGAKYNSTSTAATAAAA
AAAAAAAATAAAAAAPTAALPAGVVEATAVGGRHVGGREAGRARIMMPQR
TTLSGVAPIPVTAAAAAGAEHSGTPAKGATTACVKLTVVFVVATALCVLL
IVLAEVCGAADMVMDVVADMCLAFFAPFPRQPIY*
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mRNA from alignment at P-fluviatile_contig9:2352426..2355473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15257.1 ID=mRNA_P-fluviatile_contig9.15257.1|Name=mRNA_P-fluviatile_contig9.15257.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3048bp|location=Sequence derived from alignment at P-fluviatile_contig9:2352426..2355473- (Porterinema fluviatile SAG_2381)
ACGGCAGCAGCGTGGACGACAGTAACATGGACGGGAACTCCGGACGCGTG
GAAGCGCTGGCGGCCGAGGTGACACCGTCGCTGCAGCCGGAGGAGGGAAG
CTCCTCGCCCACAGCGGGGATCGATATTTGCGGCAGCAGCAGCAGTGGCA
TCACGAACGGCCACGCCTCTTCTGCCGTGACTGCTCGTACTCCGTCCGCC
GTGTTGGCGTTCGTGCACGTGTGTGGGGAACCCGACGGGACGACGCCCGA
CCCTGGTAGCTGTAACGCTGCGAGCAGGTACCGCGGATACGTGCCGCACA
GCCCGATCTCGCTTTCCCCCGGCATTGAAGGGGGGCGCGACGACGAGGGA
GTGGGGGGCGTTGATGTGCCAAGCACGCCTGCGGCGGCGGCTACTCTCGC
GGAGATGATGACGGCCGCAGGCGGAAACGCATCGGGCTCAGGGGGCATTG
CTGCTGAAGAGGAGGGGAGTGAGAGCTCCGTAGAAGGAGGACCGACCAAG
GGCAAGGACGAAAGTCGCGCGTCCCATGAGAAGTCGATGCTGGCCGTTCG
GCAGGTAGGTTCGCAAGAAGCAGTGTCCTCGCTGCCGTGGACTTCCGTCA
AGCCTCATTGTGTAATAATGCGACACGCTCAGTCCTGCCCCTTCGAGATA
ATTAGAAGCTCTTAACGGTGTTTCTAGCCTCGGGGGCAGATCCGGAAGCG
CCCGAAAAAATTTTTTACGCCATTCTCTGCTTGTTTCATTTATCGTGTTG
TGAGACGAATGGGAAGTCACGTGCTGTAGCACTCTAGACTCTCCGAAACA
CATCGGGTACTACCTTTGTTTGCTCATCACCTTTCCGCATCTGTGCGCGC
GCGAAGGACATGCACCTTGCACCCTATTTTCAGCGGCTTTTCACGCGACA
GTCAATACCCATCCTTAGGACAAAGCTTTATTCTCTGTCCGATCTCATGC
ACTTGCCCGGCGCTGAGCGCTGGACGCAGCAGGCGCAGCAGCGGTCGACC
CAGCCGACACACGGAACACCATCCCGACGAAGTACCGCGGGCCCCAGATT
GCCGATGGTTACGCCAAGGCGCCGTAAAGCGGCGTCGCAGCTCATCGACC
TGAGCAAGGCAACCCCGAGGGGTATGATCAGGTAAGCTGCCAACTCGCGT
CCCCCCCCTGCCCTTGCGCACGGACGTTCGATGCACCACTCACTGGCGGC
TTAGGTAGATCTCTTTGTGGGAAAAGACCCGGGTAAAAATTGGATCGAAC
TAGGACTCGCGTTCTTGGTGGAGAGGCTTCGATGCCCGGGCGATCTGCGG
ACTGATGCCGGCCGCGGCACGAAGAGAAGTCACTACCTGCGCAAGGTGAT
ATGGAAAGTCAAGGTTTGCGCTTTTGTTGAGGCACGAAGTTTGTTGTACT
ACTGTATTGCACTTTCGCTTACGGCCGACCCAGAGTCGTACCCGCTCGAT
GGACACGCCGCTCGGCAGTACGCGGTGGTGAGAGCCGTCACCAATTCTTG
ACTTCTCTACCGCCTACAGCAGCGTTGCCTAGGACAGTCGTCCTTCAAAA
CAAAGTTCTCGCTTCCCTCATTTTTTTGGCTGCGCTGAAACCCCCACCAC
ATTTTCTTCGCCTACGTTGAGCACCAAGACTTTCCTAGAGCCAAAAACAT
GTTCCCTGATCTCGTCGTTAAACAATTTGCCCATGGACAATTCTTGCATC
CTGCGGCGTGAATTTGAATTTTCGCCATCCTTTGGACGGAGTCTGTCCTA
CAACACACCCAAGTCTCGTTTTGTGATTATTTACTTCGTTTCCAATTGCA
CTGCGCGACGTTTCACTTCGGTAGTAGAATTCATGCGCAGAAGTATGGAT
TGAAATATGCCCCAATTTTGTTCTTGAAGGCGAGGCTGCCCGTAAAAAAA
CTCAATATGCAGTCCTCTAACTTTCGTGTTGATGTTGATGGGGTCGAAAT
TTGCCGTGCTCCCTCGTTGCTTCAATCTCCTTGGGGTGCAGGGGGATCCT
CGGAGGGGGTGACTTGCCGGCCCACGCTTGGCAGCCCCGCTATCAGCACC
GGCGCTACGTACCTCAGGCGGCCGAATTGGGGAAGACCATTGAAGAGGAA
ACTCCCCGGACGCTGCTGAGGGGTGTTTGCGCGCCAGGAGATGCCAAGGA
TTTTGTCGCTACCGGCGCCAAGTACAATTCCACGTCAACTGCTGCTACCG
CAGCCGCCGCAGCAGCCGCAGCAGCCGCCGCCGCTACTGCTGCCGCTGCA
GCGGCACCTACCGCTGCCCTCCCTGCCGGTGTGGTCGAAGCGACAGCTGT
GGGTGGCCGACATGTCGGCGGCCGAGAGGCGGGCCGCGCTCGCATCATGA
TGCCACAGCGTACCACGGTGAGAATGGCTGGTTGTGGGTGGAAGCACGCG
CCGCACTCTGCGAGAGGTGCCACCATGGTCTCGAATGGCTGTGTCCTCCG
TGATAATTTTTACTCCTTGTAGCTTGGAGGATGTTGTGGAGCCACCAAAA
GAGGCGGAGCTCCTAGCGAAGGGTAGCTTGTTCGATGAACTATTCTCGAG
GAATGGATAGTACGCAGGAAGGTCCTTTTTGGAAGGCATTTATTTTCGGA
ATGTTTGTGCGAGCGAGAATCTGCTTCTTCACTTACCCGGAATCCTCCCT
GCCACCGTTTCGCCGAACGCCAAACATGACCCGCGGCACTTCCTTTCTCC
CTCCGGACCTAGCTTTCCGGTGTCGCCCCCATTCCCGTCACAGCGGCCGC
AGCCGCAGGCGCGGAACACAGCGGCACGCCTGCCAAGGGGGCGACAACAG
CGTGTGTGAAGCTGACCGTCGTCTTCGTCGTGGCCACCGCGCTCTGCGTG
CTGTTGATCGTGCTGGCCGAGGTTTGTGGGGCTGCCGACATGGTGATGGA
CGTTGTAGCCGACATGTGTCTGGCTTTCTTCGCCCCCTTCCCGAGACAGC
CTATCTACTGAGAGCACAGAGTACGGGCGATCGTGAAGAAATAGGCGGTG
GCGTCCGTTTTTTGTTCTGGCCCTGAGCACGAAGGCACCGCACCACAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:2352426..2355473-

>mRNA_P-fluviatile_contig9.15257.1 ID=mRNA_P-fluviatile_contig9.15257.1|Name=mRNA_P-fluviatile_contig9.15257.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2610bp|location=Sequence derived from alignment at P-fluviatile_contig9:2352426..2355473- (Porterinema fluviatile SAG_2381)
ATGGACGGGAACTCCGGACGCGTGGAAGCGCTGGCGGCCGAGGTGACACC
GTCGCTGCAGCCGGAGGAGGGAAGCTCCTCGCCCACAGCGGGGATCGATA
TTTGCGGCAGCAGCAGCAGTGGCATCACGAACGGCCACGCCTCTTCTGCC
GTGACTGCTCGTACTCCGTCCGCCGTGTTGGCGTTCGTGCACGTGTGTGG
GGAACCCGACGGGACGACGCCCGACCCTGGTAGCTGTAACGCTGCGAGCA
GGTACCGCGGATACGTGCCGCACAGCCCGATCTCGCTTTCCCCCGGCATT
GAAGGGGGGCGCGACGACGAGGGAGTGGGGGGCGTTGATGTGCCAAGCAC
GCCTGCGGCGGCGGCTACTCTCGCGGAGATGATGACGGCCGCAGGCGGAA
ACGCATCGGGCTCAGGGGGCATTGCTGCTGAAGAGGAGGGGAGTGAGAGC
TCCGTAGAAGGAGGACCGACCAAGGGCAAGGACGAAAGTCGCGCGTCCCA
TGAGAAGTCGATGCTGGCCGTTCGGCAGATGGACGGGAACTCCGGACGCG
TGGAAGCGCTGGCGGCCGAGGTGACACCGTCGCTGCAGCCGGAGGAGGGA
AGCTCCTCGCCCACAGCGGGGATCGATATTTGCGGCAGCAGCAGCAGTGG
CATCACGAACGGCCACGCCTCTTCTGCCGTGACTGCTCGTACTCCGTCCG
CCGTGTTGGCGTTCGTGCACGTGTGTGGGGAACCCGACGGGACGACGCCC
GACCCTGGTAGCTGTAACGCTGCGAGCAGGTACCGCGGATACGTGCCGCA
CAGCCCGATCTCGCTTTCCCCCGGCATTGAAGGGGGGCGCGACGACGAGG
GAGTGGGGGGCGTTGATGTGCCAAGCACGCCTGCGGCGGCGGCTACTCTC
GCGGAGATGATGACGGCCGCAGGCGGAAACGCATCGGGCTCAGGGGGCAT
TGCTGCTGAAGAGGAGGGGAGTGAGAGCTCCGTAGAAGGAGGACCGACCA
AGGGCAAGGACGAAAGTCGCGCGTCCCATGAGAAGTCGATGCTGGCCGTT
CGGCAGCAGGCGCAGCAGCGGTCGACCCAGCCGACACACGGAACACCATC
CCGACGAAGTACCGCGGGCCCCAGATTGCCGATGGTTACGCCAAGGCGCC
GTAAAGCGGCGTCGCAGCTCATCGACCTGAGCAAGGCAACCCCGAGGGGT
ATGATCAGCAGGCGCAGCAGCGGTCGACCCAGCCGACACACGGAACACCA
TCCCGACGAAGTACCGCGGGCCCCAGATTGCCGATGGTTACGCCAAGGCG
CCGTAAAGCGGCGTCGCAGCTCATCGACCTGAGCAAGGCAACCCCGAGGG
GTATGATCAGGGGGATCCTCGGAGGGGGTGACTTGCCGGCCCACGCTTGG
CAGCCCCGCTATCAGCACCGGCGCTACGTACCTCAGGCGGCCGAATTGGG
GAAGACCATTGAAGAGGAAACTCCCCGGACGCTGCTGAGGGGTGTTTGCG
CGCCAGGAGATGCCAAGGATTTTGTCGCTACCGGCGCCAAGTACAATTCC
ACGTCAACTGCTGCTACCGCAGCCGCCGCAGCAGCCGCAGCAGCCGCCGC
CGCTACTGCTGCCGCTGCAGCGGCACCTACCGCTGCCCTCCCTGCCGGTG
TGGTCGAAGCGACAGCTGTGGGTGGCCGACATGTCGGCGGCCGAGAGGCG
GGCCGCGCTCGCATCATGATGCCACAGCGTACCACGGGGGATCCTCGGAG
GGGGTGACTTGCCGGCCCACGCTTGGCAGCCCCGCTATCAGCACCGGCGC
TACGTACCTCAGGCGGCCGAATTGGGGAAGACCATTGAAGAGGAAACTCC
CCGGACGCTGCTGAGGGGTGTTTGCGCGCCAGGAGATGCCAAGGATTTTG
TCGCTACCGGCGCCAAGTACAATTCCACGTCAACTGCTGCTACCGCAGCC
GCCGCAGCAGCCGCAGCAGCCGCCGCCGCTACTGCTGCCGCTGCAGCGGC
ACCTACCGCTGCCCTCCCTGCCGGTGTGGTCGAAGCGACAGCTGTGGGTG
GCCGACATGTCGGCGGCCGAGAGGCGGGCCGCGCTCGCATCATGATGCCA
CAGCGTACCACGCTTTCCGGTGTCGCCCCCATTCCCGTCACAGCGGCCGC
AGCCGCAGGCGCGGAACACAGCGGCACGCCTGCCAAGGGGGCGACAACAG
CGTGTGTGAAGCTGACCGTCGTCTTCGTCGTGGCCACCGCGCTCTGCGTG
CTGTTGATCGTGCTGGCCGAGGTTTGTGGGGCTGCCGACATGGTGATGGA
CGTTGTAGCCGACATGTGTCTGGCTTTCTTCGCCCCCTTCCCGAGACAGC
CTATCTACTGACTTTCCGGTGTCGCCCCCATTCCCGTCACAGCGGCCGCA
GCCGCAGGCGCGGAACACAGCGGCACGCCTGCCAAGGGGGCGACAACAGC
GTGTGTGAAGCTGACCGTCGTCTTCGTCGTGGCCACCGCGCTCTGCGTGC
TGTTGATCGTGCTGGCCGAGGTTTGTGGGGCTGCCGACATGGTGATGGAC
GTTGTAGCCGACATGTGTCTGGCTTTCTTCGCCCCCTTCCCGAGACAGCC
TATCTACTGA
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