mRNA_P-fluviatile_contig9.15254.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15254.1
Unique NamemRNA_P-fluviatile_contig9.15254.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15254.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 9.220e-58
Identity = 109/166 (65.66%), Postives = 124/166 (74.70%), Query Frame = 1 
Query:    1 MDNPLQPTCWAGMQAMGTLFGTMFGFVSAALMTPVGDGDREAGMPAAPGVIVGSSLGVLAAHSAGEGNQPLRHMAYFLVLGVAAAAATTAVCGGLVGGILNKGGSAGIMVLATVASLGSTAAFALLKHNILLARADAGADISNGCGHDALPRTDADRTPLMDLKEV 498
            MD+ LQPTCWAGMQAMGTL GTMFGFVSAAL+TP+  G+RE G+PAAPGVI+GSSLGVLAA+SAGEG QPLR + Y L+L V AAA TTA C  L G +L  GGS GIMVLATVASLGSTA F + KHN+LL RA   A   +   H+ LP    +   LMDLK V
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEES--LMDLKAV 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI9.220e-5865.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:2298897..2302480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Exons4
Model size1260
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15254.1prot_P-fluviatile_contig9.15254.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 2299656..2302480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.9015176-UTR-P-fluviatile_contig9:2298896..22996551622817336.9015176-UTR-P-fluviatile_contig9:2298896..2299655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2298897..2299655 -
1693572125.833972-UTR-P-fluviatile_contig9:2298896..22996551693572125.833972-UTR-P-fluviatile_contig9:2298896..2299655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 2298897..2299655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.9118192-CDS-P-fluviatile_contig9:2299655..22998501622817336.9118192-CDS-P-fluviatile_contig9:2299655..2299850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2299656..2299850 -
1693572126.007096-CDS-P-fluviatile_contig9:2299655..22998501693572126.007096-CDS-P-fluviatile_contig9:2299655..2299850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2299656..2299850 -
1622817336.9222462-CDS-P-fluviatile_contig9:2300077..23002331622817336.9222462-CDS-P-fluviatile_contig9:2300077..2300233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2300078..2300233 -
1693572126.2421405-CDS-P-fluviatile_contig9:2300077..23002331693572126.2421405-CDS-P-fluviatile_contig9:2300077..2300233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2300078..2300233 -
1622817336.9360583-CDS-P-fluviatile_contig9:2300740..23008481622817336.9360583-CDS-P-fluviatile_contig9:2300740..2300848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2300741..2300848 -
1693572126.2543314-CDS-P-fluviatile_contig9:2300740..23008481693572126.2543314-CDS-P-fluviatile_contig9:2300740..2300848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2300741..2300848 -
1622817336.9466188-CDS-P-fluviatile_contig9:2302438..23024801622817336.9466188-CDS-P-fluviatile_contig9:2302438..2302480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2302439..2302480 -
1693572126.2713006-CDS-P-fluviatile_contig9:2302438..23024801693572126.2713006-CDS-P-fluviatile_contig9:2302438..2302480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2302439..2302480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15254.1

>prot_P-fluviatile_contig9.15254.1 ID=prot_P-fluviatile_contig9.15254.1|Name=mRNA_P-fluviatile_contig9.15254.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MDNPLQPTCWAGMQAMGTLFGTMFGFVSAALMTPVGDGDREAGMPAAPGV
IVGSSLGVLAAHSAGEGNQPLRHMAYFLVLGVAAAAATTAVCGGLVGGIL
NKGGSAGIMVLATVASLGSTAAFALLKHNILLARADAGADISNGCGHDAL
PRTDADRTPLMDLKEV*
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mRNA from alignment at P-fluviatile_contig9:2298897..2302480-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15254.1 ID=mRNA_P-fluviatile_contig9.15254.1|Name=mRNA_P-fluviatile_contig9.15254.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3584bp|location=Sequence derived from alignment at P-fluviatile_contig9:2298897..2302480- (Porterinema fluviatile SAG_2381)
ATGGATAACCCTCTTCAGCCGACGTGCTGGGCAGGAATGCAGGTGCTAGA
CCCTACTCGTAGCTAAGCTTTCTCAAAAACCGTGGCGACGGTGGTGAAAC
TCCTTGTCTGTAGTCGCGTTGACTTGTCGCGTGTCAGCTGACTGTACATT
ACTGCAGGAAACCTCCCTCGTATGCACCTCGCGAATCCTGGACGGATCGA
CTGGAATGGTTGTTGCGATCATGTTTGATTACTTTGTTATCACGGATGGA
TTGGTTCAGGGTCGGGCGCATAACACACTTTCCGCGGCACCGGCTCTATT
GATATTAGGTACGTGTCCTCTGGTTGTGTAGATGAAAGACTTTCGTCCTG
ACCCCAGCGAAGGAAGCCATGGAGAACGGGCGTGTGCATTGGTAAGCTTA
CGTCTATTGCTATGGCGGGAGCACCAAAGGCCGCGGTAGTAGCTCAGAAA
CCCCTGACGCCATAGGCACCACCTGACCTGTGGGTCTTTCGTGCATGATT
ATTTGAGCGGCTTGGCGACTGCAGCAGCGAGCACTACAGTGGCCTCCGGT
TGCGGTCCAATCTGCGGACACTTCGACATCTCCCCTCCAAAAATAGACCC
GAGCGTCCAAGCACTCACGTCGCTTCGTGTTGTCCTCTACCGATTTTGCA
TTCCAGAGCGGGACTCTCGCACGCAAAAACTAATGTGAGCACTAGCCGTT
TGGCTGTTTAGTCTTCGGCTGTATGCTTAAGGGCAACGATGTAAAATTCA
TGTACATGTGTAGCGAAGCCCCCGCTCTGCACGAAAATGGGGGACCTTTT
CGTACGTATCGCATTCCGTGTGGTGTGATGTACCGAGAGTGTGTTTGCTG
GGGGGTCCGATACTCTTTTCAAAATCGGACAAGCCAGTCACGAGATGTAA
ACAGATGCATTCGGGTATAGCGAAAGATGCACTTCGCACCTTCAAGCGTA
TGCCCTCGAGATTAGGCGTCCCCGTTCCCCGCTACCTTAAGTGGCAGACG
CCGAAGTTCTACTGAGTTGAAATGCAGTTTTCTGTTCTCGCTTTTCTTGC
AGCCTATTCTCATCACCATCGATTGGGTACACTCTGCCCTGCGAGCTGTT
TGCGATCCTGGTGAAAAAGTATCGCCAGAAAAGCTCGAGTTGCACGCGTT
ATAGCCGCCAAAATCGAGCACGAAAACACGAAAAAACACTTGGCCACAGC
GGTGTTTCTTTGTTATTCGGGCAGCTGAAGGAGCGAAACGATGCCGGAAA
GCACCCCGTGTTGACGCGTGAGAGCGCATTCCCTGTTGGCACACCTGGTG
GTTAAACCAGCTGTGATTACTTCAAGCTAAGCTTTCTAGCCAAGCTTGCA
GAGGATGAGCAGGACATACGAGAGCATTACGAGGAGGAGGATTGGGAACT
TCTCGATGGGCATTCAAATCTCATCCGGTCTACCTGACTGGAGTTTCCGT
ACCTCTGAGTATACCTGTTCTTTGCGTGACGCGAGTCCCTTCGTTTTTCA
AGACCGTGTGAGCACTTATTTCCCATCAAGTCTATCTGACGGATTTTAAG
GGCGGCAAACACCTGTGACTAATTTTCGGGTTCGCGGAGCGACATCTAAC
ACAGGTATTCTTTTGACCCCCTCGTCACGCAGGCCATGGGTACGTTGTTT
GGGACAATGTTTGGTTTCGTGTCTGCTGCCCTCATGACTCCAGTTGGTGA
CGGAGACAGAGAAGCAGGCATGCCGGCAGCACCTGGTGTGGTGAGTATCG
CCGCCGTCGTCCTTATCGCCTCCGCAAAAAAATCCAGCGAGTTTTCGTGG
TTTTCACTGGTGGCCATGTTCTGCTCACATCACGACTGCTCCAGGACGTT
GTCCGTGTGGTGCGATTCTTTCGCATGAGTAACATTTGAGGGCAGTATCG
GTATGGACGTCGTCACTTCAACTTTGCACGTGTTTGTTGTATTTTGTCGA
TCTCCCACGTCTATGCACGGCTCAAGTTATCATCCAAGGTATCATAACCC
CGTAACAGCTTGGTTGACTTTGCAAATACTTTGAAGTACAGAACACGCTC
CCGCGCTGCGGAGAATCATCGGAACTTTGCCGTCTTTTCGACCTCTTTGC
TCAGGAGCATTTCTGCGCGATACAGCCCCTCAGAGACCACGACTACAAAA
ATGGCACAGCTTTGAAGCCGAAATACATTAAAGCTGCCGCAACCTTCCGA
CAACGAAAATAGTGCTGTATCTTTGTGCGTTTTTGTGGTCTTGGCAGATC
GTCGGATCTTCCCTCGGCGTGCTCGCTGCCCACTCTGCGGGCGAAGGAAA
TCAGCCCCTACGACACATGGCCTATTTCTTGGTTCTCGGCGTAGCGGCCG
CCGCAGCGACAACGGCAGTATGCGGGGGGCTAGTAGGAGGTATTCTGAAT
AAAGTGAGCCTGGTCCTCGTCGAGTTCCACAGCCAACGTGTGAATGTGCG
GTGTATCAGCGAAACGTATACCCTCCATCAACCGTCGTCGCTGCGTGTAC
TCACGTTGGTACAAGGAAGCATCTATCAGGCCTGATCTCGCATGTCAGTA
GCCACTACTACGGGTGCTGCATGGCGCTCTTCTCCTTGATCCCCTTTTGC
CCTGTGTTCTGTTGTGGATTGTTCACTCAGGGTGGAAGCGCCGGTATCAT
GGTGTTAGCGACGGTGGCGTCGCTTGGCTCGACGGCGGCGTTTGCCCTGC
TCAAACACAATATTCTGCTTGCAAGAGCAGATGCAGGAGCAGACATATCG
AACGGTTGCGGCCATGACGCATTGCCGAGGACAGATGCCGACCGCACCCC
GTTAATGGACCTCAAGGAGGTCTGACGCAGTGCGGATATGTGCGCTTCCT
GGAAAATGGGTCGCGTGGGCGGTGTGTTCGTAAACATGGCGCGCCCGCTG
CCGCGTATGCAGAAGGGGCAAGTTCGGCGTGAAGCGCTAACAACGACACA
CCGCTCAATGTGACCACTGCCGCCGTGCTTATCGAAGTCCGTTGTGTAAC
TGCTTCCGTGGTATGCTTCAAGACGCCTAGTCGCGCGGGTTGTTCCACGC
TACCACAGCTGTGCAACAGGTTGGAAGTCCGTTGATCTGCGGTTGGTTTT
CTCTTGCGCTTTCGATCCGCGATTTTAACCGACGGAGACCTCAACGTCAT
CGAAGTCGTATAAATTACTCATCATGCCGAACGAATGACCACGCCGTCAA
TTTCCAAAGCCTTCCTGGGTGGAGCAAAAAACTTGATGTTTTGGGGGGTT
GTACCCCCGCGACCGCCGCTTCTTTGAGCAGCGCGCAAACACTTCTGTTG
TGTACATACGGGTAGCCGGTTAGGTAGCGGATACTTCCAACCCGATGGAA
TACGTCGGTCCGCTTCGGGACCAAAGGAAGCTTGGCGGACTTCGATAGCA
CGGATCAAGAGCACCAAGCTGCGCTTCAAAAAGGCTTCTCGAGCGTCTAC
GTCATTCGCGACCGGCCAAAACCGCCGACGCTACGCGATTTCTCGTGCCG
CATGTGTGCAAGTTATTTCATGAGAACCGATGTTGAAAGGCAGCTGAAGG
AGAGCGCATTTCTGACGATGCCGGCCTACACGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:2298897..2302480-

>mRNA_P-fluviatile_contig9.15254.1 ID=mRNA_P-fluviatile_contig9.15254.1|Name=mRNA_P-fluviatile_contig9.15254.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig9:2298897..2302480- (Porterinema fluviatile SAG_2381)
ATGGATAACCCTCTTCAGCCGACGTGCTGGGCAGGAATGCAGATGGATAA
CCCTCTTCAGCCGACGTGCTGGGCAGGAATGCAGGCCATGGGTACGTTGT
TTGGGACAATGTTTGGTTTCGTGTCTGCTGCCCTCATGACTCCAGTTGGT
GACGGAGACAGAGAAGCAGGCATGCCGGCAGCACCTGGTGTGGCCATGGG
TACGTTGTTTGGGACAATGTTTGGTTTCGTGTCTGCTGCCCTCATGACTC
CAGTTGGTGACGGAGACAGAGAAGCAGGCATGCCGGCAGCACCTGGTGTG
ATCGTCGGATCTTCCCTCGGCGTGCTCGCTGCCCACTCTGCGGGCGAAGG
AAATCAGCCCCTACGACACATGGCCTATTTCTTGGTTCTCGGCGTAGCGG
CCGCCGCAGCGACAACGGCAGTATGCGGGGGGCTAGTAGGAGGTATTCTG
AATAAAATCGTCGGATCTTCCCTCGGCGTGCTCGCTGCCCACTCTGCGGG
CGAAGGAAATCAGCCCCTACGACACATGGCCTATTTCTTGGTTCTCGGCG
TAGCGGCCGCCGCAGCGACAACGGCAGTATGCGGGGGGCTAGTAGGAGGT
ATTCTGAATAAAGGTGGAAGCGCCGGTATCATGGTGTTAGCGACGGTGGC
GTCGCTTGGCTCGACGGCGGCGTTTGCCCTGCTCAAACACAATATTCTGC
TTGCAAGAGCAGATGCAGGAGCAGACATATCGAACGGTTGCGGCCATGAC
GCATTGCCGAGGACAGATGCCGACCGCACCCCGTTAATGGACCTCAAGGA
GGTCTGAGGTGGAAGCGCCGGTATCATGGTGTTAGCGACGGTGGCGTCGC
TTGGCTCGACGGCGGCGTTTGCCCTGCTCAAACACAATATTCTGCTTGCA
AGAGCAGATGCAGGAGCAGACATATCGAACGGTTGCGGCCATGACGCATT
GCCGAGGACAGATGCCGACCGCACCCCGTTAATGGACCTCAAGGAGGTCT
GA
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