mRNA_P-fluviatile_contig9.15246.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15246.1
Unique NamemRNA_P-fluviatile_contig9.15246.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:2217560..2218210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.7149518-CDS-P-fluviatile_contig9:2217561..22176421622817301.7149518-CDS-P-fluviatile_contig9:2217561..2217642Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2217562..2217642 -
1693571998.114001-CDS-P-fluviatile_contig9:2217561..22176421693571998.114001-CDS-P-fluviatile_contig9:2217561..2217642Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2217562..2217642 -
1622817301.72553-CDS-P-fluviatile_contig9:2218126..22182101622817301.72553-CDS-P-fluviatile_contig9:2218126..2218210Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2218127..2218210 -
1693571998.1292715-CDS-P-fluviatile_contig9:2218126..22182101693571998.1292715-CDS-P-fluviatile_contig9:2218126..2218210Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 2218127..2218210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15246.1prot_P-fluviatile_contig9.15246.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 2217562..2218210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15246.1

>prot_P-fluviatile_contig9.15246.1 ID=prot_P-fluviatile_contig9.15246.1|Name=mRNA_P-fluviatile_contig9.15246.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
QGTRKRALLQVLRTASFRTDTTGGQQLMLVLEPLYFLLKSAENRGRGSRR
RAPSI
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mRNA from alignment at P-fluviatile_contig9:2217560..2218210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15246.1 ID=mRNA_P-fluviatile_contig9.15246.1|Name=mRNA_P-fluviatile_contig9.15246.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig9:2217560..2218210- (Porterinema fluviatile SAG_2381)
CAGGGCACGCGCAAGCGTGCATTATTACAGGTTTTACGAACCGCATCGTT
CAGAACGGACACTACGGGCGGGCAGCAGCTTATGGTGCGGAGGTCAGCGC
GTGATAAAAATCGTGATTATTAATGGCCTGCTGTTAAAAAGTGGAGAGAC
TAGTCAGGCAGCAAGTCGTAAAATTGTCTCCCCGAGGGCAGCTTGTGCTG
CTCTTCCCCGGCCAGAATATCAAGTGCCACGTGTGATTGTGGGCACGGCG
GAGCAAAACAATCGGAGATCTTTCAAGACTCACGATCACGGGGCCGCAAA
CGTGCTTTTTCCTTTTGACTTGCTCTTAGGGGATCACAGCAATCAATAGT
TTCCCTGGGACCCAAACAAATTATGAAACGTGTTTTTGGCTGAGTGCGGG
GTTCCCAAGCCACAGAGGGTCCTTCCTCTGTGGCTGTGGTGAGTTGAGCC
TCAAGCACCGGGGTATTTACCCATGGGCCGTCCCGCTGTAAAGACTCATG
ACCTGCAGGGTTGTTCTCACTTGCCCTGGCTCCCCATCCCCGTCAACGGC
TCCGCCTTGTCCCGCCAGCTGGTCCTTGAGCCGCTGTATTTCCTCCTGAA
ATCTGCAGAGAACAGGGGCAGAGGGTCACGACGACGAGCTCCGTCGATAG
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:2217560..2218210-

>mRNA_P-fluviatile_contig9.15246.1 ID=mRNA_P-fluviatile_contig9.15246.1|Name=mRNA_P-fluviatile_contig9.15246.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig9:2217560..2218210- (Porterinema fluviatile SAG_2381)
CAGGGCACGCGCAAGCGTGCATTATTACAGGTTTTACGAACCGCATCGTT
CAGAACGGACACTACGGGCGGGCAGCAGCTTATGCAGGGCACGCGCAAGC
GTGCATTATTACAGGTTTTACGAACCGCATCGTTCAGAACGGACACTACG
GGCGGGCAGCAGCTTATGCTGGTCCTTGAGCCGCTGTATTTCCTCCTGAA
ATCTGCAGAGAACAGGGGCAGAGGGTCACGACGACGAGCTCCGTCGATAC
TGGTCCTTGAGCCGCTGTATTTCCTCCTGAAATCTGCAGAGAACAGGGGC
AGAGGGTCACGACGACGAGCTCCGTCGATA
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