mRNA_P-fluviatile_contig9.15165.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15165.1
Unique NamemRNA_P-fluviatile_contig9.15165.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.960e-61
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 294
            MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTY+ALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.390e-53
Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTYAALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNP++
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH)

HSP 1 Score: 158 bits (400), Expect = 1.280e-48
Identity = 76/97 (78.35%), Postives = 88/97 (90.72%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ YAAL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNP+ 
Sbjct:    1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPNE 97          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.160e-45
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
            MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL  ED  TY+AL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNP+
Sbjct:   38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.180e-44
Identity = 72/93 (77.42%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+YAAL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct:    1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.480e-42
Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 288
            MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL  ED   Y+AL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNP+
Sbjct:   10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN)

HSP 1 Score: 142 bits (358), Expect = 3.140e-42
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            MSSEVEETL+RIQSHRGVKGVLI++  G+PIRSNL  E+T+TYAAL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ   S
Sbjct:    1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.010e-40
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL  ++T TYAAL+SQL+ KA  +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG)

HSP 1 Score: 131 bits (330), Expect = 6.550e-38
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L    T  Y+ALI+QL+ KA  +VR LD  + LTFLR+RS KHEIMVAPDK+YILIVIQNP  
Sbjct:    2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNPQE 96          
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5)

HSP 1 Score: 131 bits (330), Expect = 1.130e-37
Identity = 63/97 (64.95%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 291
            + SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T  Y+ALISQL++KA  ++R LD  + LTFLRLRS KHEIMVAPDKDYILIVIQ+P++
Sbjct:   14 LMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNA 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G586_ECTSI1.960e-6198.98Dynein light chain roadblock n=2 Tax=Ectocarpus Ta... [more]
A0A836CL08_9STRA2.390e-5385.57Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A482SBS1_9ARCH1.280e-4878.35Roadblock/LC7 domain-containing protein n=1 Tax=ar... [more]
A0A7S2FUR4_9STRA3.160e-4575.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1U8Y1_9STRA1.180e-4477.42Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2STB6_9STRA1.480e-4269.79Dynein light chain roadblock n=1 Tax=Rhizochromuli... [more]
F0Y4U8_AURAN3.140e-4271.13Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A8J2WXW4_9STRA3.010e-4070.97Dynein light chain roadblock n=1 Tax=Pelagomonas c... [more]
A0A1Y2ATV3_9FUNG6.550e-3867.37Dynein light chain roadblock n=3 Tax=Neocallimasti... [more]
C5KNE1_PERM51.130e-3764.95Roadblock, putative n=1 Tax=Perkinsus marinus (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:1544355..1544651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.4e-46
Seed eggNOG ortholog2880.D7G586
KEGG koko:K10419
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative: flagellar outer dynein arm light chain LC7
Ec32 orthologEc-14_006610.1
Exons1
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.5793347-CDS-P-fluviatile_contig9:1544354..15446511622817324.5793347-CDS-P-fluviatile_contig9:1544354..1544651Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1544355..1544651 -
1693572063.5890238-CDS-P-fluviatile_contig9:1544354..15446511693572063.5890238-CDS-P-fluviatile_contig9:1544354..1544651Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1544355..1544651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15165.1prot_P-fluviatile_contig9.15165.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 1544355..1544651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15165.1

>prot_P-fluviatile_contig9.15165.1 ID=prot_P-fluviatile_contig9.15165.1|Name=mRNA_P-fluviatile_contig9.15165.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=99bp
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQL
SFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK*
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mRNA from alignment at P-fluviatile_contig9:1544355..1544651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15165.1 ID=mRNA_P-fluviatile_contig9.15165.1|Name=mRNA_P-fluviatile_contig9.15165.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=297bp|location=Sequence derived from alignment at P-fluviatile_contig9:1544355..1544651- (Porterinema fluviatile SAG_2381)
ATGTCGTCCGAGGTAGAGGAGACGCTGAAACGAATTCAGTCGCATCGTGG TGTGAAGGGCGTGCTGATCTTGAACAACGACGGGATCCCAATACGGTCCA ACCTCAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAGCCAGCTG AGCTTCAAGGCAAACGGCATCGTGCGAACGTTGGATGAGGCTGACAGCTT GACATTTTTGCGACTACGCAGCACGAAGCACGAGATCATGGTGGCGCCGG ACAAGGACTACATCCTGATCGTCATCCAGAACCCGCACTCGAAGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:1544355..1544651-

>mRNA_P-fluviatile_contig9.15165.1 ID=mRNA_P-fluviatile_contig9.15165.1|Name=mRNA_P-fluviatile_contig9.15165.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=594bp|location=Sequence derived from alignment at P-fluviatile_contig9:1544355..1544651- (Porterinema fluviatile SAG_2381)
ATGTCGTCCGAGGTAGAGGAGACGCTGAAACGAATTCAGTCGCATCGTGG
TGTGAAGGGCGTGCTGATCTTGAACAACGACGGGATCCCAATACGGTCCA
ACCTCAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAGCCAGCTG
AGCTTCAAGGCAAACGGCATCGTGCGAACGTTGGATGAGGCTGACAGCTT
GACATTTTTGCGACTACGCAGCACGAAGCACGAGATCATGGTGGCGCCGG
ACAAGGACTACATCCTGATCGTCATCCAGAACCCGCACTCGAAGTAGATG
TCGTCCGAGGTAGAGGAGACGCTGAAACGAATTCAGTCGCATCGTGGTGT
GAAGGGCGTGCTGATCTTGAACAACGACGGGATCCCAATACGGTCCAACC
TCAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAGCCAGCTGAGC
TTCAAGGCAAACGGCATCGTGCGAACGTTGGATGAGGCTGACAGCTTGAC
ATTTTTGCGACTACGCAGCACGAAGCACGAGATCATGGTGGCGCCGGACA
AGGACTACATCCTGATCGTCATCCAGAACCCGCACTCGAAGTAG
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