mRNA_P-fluviatile_contig9.15163.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15163.1
Unique NamemRNA_P-fluviatile_contig9.15163.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15163.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.450e-8
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:   36 SPMARARPLESSSFLVVLGTLLAHRGGIDAVTPFQTHKHVQQRQYRAGGRWVHRR 200
            S MAR RP E+S+F++VLG+LLA RGGI+AV PFQ+ +HVQ  + R G  W +RR
Sbjct:    2 SSMARPRPWETSTFVLVLGSLLAGRGGIEAVAPFQS-RHVQHTR-RGGAGWAYRR 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUK4_9PHAE2.450e-858.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:1539264..1539637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_006620.1
Exons1
Model size375
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817303.3216994-UTR-P-fluviatile_contig9:1539263..15393041622817303.3216994-UTR-P-fluviatile_contig9:1539263..1539304Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 1539264..1539304 +
1693571999.8685455-UTR-P-fluviatile_contig9:1539263..15393041693571999.8685455-UTR-P-fluviatile_contig9:1539263..1539304Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 1539264..1539304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817303.3336816-CDS-P-fluviatile_contig9:1539304..15396371622817303.3336816-CDS-P-fluviatile_contig9:1539304..1539637Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1539305..1539637 +
1693571999.8842413-CDS-P-fluviatile_contig9:1539304..15396371693571999.8842413-CDS-P-fluviatile_contig9:1539304..1539637Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1539305..1539637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15163.1prot_P-fluviatile_contig9.15163.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 1539305..1539637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15163.1

>prot_P-fluviatile_contig9.15163.1 ID=prot_P-fluviatile_contig9.15163.1|Name=mRNA_P-fluviatile_contig9.15163.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MARARPLESSSFLVVLGTLLAHRGGIDAVTPFQTHKHVQQRQYRAGGRWV
HRREAAIGAGGITAALEPSGRGLAERTRTELSQGAVRQSSGVRIAAALRG
GRSMRNSKLDN
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mRNA from alignment at P-fluviatile_contig9:1539264..1539637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15163.1 ID=mRNA_P-fluviatile_contig9.15163.1|Name=mRNA_P-fluviatile_contig9.15163.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=374bp|location=Sequence derived from alignment at P-fluviatile_contig9:1539264..1539637+ (Porterinema fluviatile SAG_2381)
GATAGGTAATCGGATCGGGGTGTACGTCGCAACGGTCACCGATGGCACGC
GCACGACCTCTTGAATCCTCGTCCTTCTTGGTTGTGTTGGGGACCCTGCT
GGCTCATCGAGGTGGTATCGATGCAGTCACCCCTTTTCAAACCCATAAAC
ATGTGCAGCAGCGGCAGTATCGAGCGGGCGGACGGTGGGTGCACAGACGA
GAAGCGGCCATCGGTGCTGGCGGGATCACAGCAGCGCTCGAGCCGAGCGG
TAGAGGCCTAGCTGAGAGGACCAGGACAGAATTGTCGCAGGGTGCGGTGC
GGCAGTCATCAGGGGTAAGGATTGCTGCTGCGTTGAGGGGCGGGCGGTCG
ATGCGGAACAGTAAGTTGGACAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:1539264..1539637+

>mRNA_P-fluviatile_contig9.15163.1 ID=mRNA_P-fluviatile_contig9.15163.1|Name=mRNA_P-fluviatile_contig9.15163.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig9:1539264..1539637+ (Porterinema fluviatile SAG_2381)
ATGGCACGCGCACGACCTCTTGAATCCTCGTCCTTCTTGGTTGTGTTGGG
GACCCTGCTGGCTCATCGAGGTGGTATCGATGCAGTCACCCCTTTTCAAA
CCCATAAACATGTGCAGCAGCGGCAGTATCGAGCGGGCGGACGGTGGGTG
CACAGACGAGAAGCGGCCATCGGTGCTGGCGGGATCACAGCAGCGCTCGA
GCCGAGCGGTAGAGGCCTAGCTGAGAGGACCAGGACAGAATTGTCGCAGG
GTGCGGTGCGGCAGTCATCAGGGGTAAGGATTGCTGCTGCGTTGAGGGGC
GGGCGGTCGATGCGGAACAGTAAGTTGGACAACATGGCACGCGCACGACC
TCTTGAATCCTCGTCCTTCTTGGTTGTGTTGGGGACCCTGCTGGCTCATC
GAGGTGGTATCGATGCAGTCACCCCTTTTCAAACCCATAAACATGTGCAG
CAGCGGCAGTATCGAGCGGGCGGACGGTGGGTGCACAGACGAGAAGCGGC
CATCGGTGCTGGCGGGATCACAGCAGCGCTCGAGCCGAGCGGTAGAGGCC
TAGCTGAGAGGACCAGGACAGAATTGTCGCAGGGTGCGGTGCGGCAGTCA
TCAGGGGTAAGGATTGCTGCTGCGTTGAGGGGCGGGCGGTCGATGCGGAA
CAGTAAGTTGGACAAC
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