mRNA_P-fluviatile_contig9.15150.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15150.1
Unique NamemRNA_P-fluviatile_contig9.15150.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15150.1 vs. uniprot
Match: D7G5A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A1_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 7.050e-43
Identity = 96/158 (60.76%), Postives = 110/158 (69.62%), Query Frame = 1 
Query:    1 MRSTQYPRIPRAMLCSALLLSHHAVVDANNWATRRASSSRTSTLAVMQPGGRNRPVRDWKAIKREAEDKLAKEAEEKAMEKKQQAGEAVXXXXEKLDEVHEGVDKLETASADVLDLDAGTPQSLGIMLAKVAVVTTVGLYGAKKVVSFVKAFMKARKE 474
            MRST YPR+PRA+ CSALLLS HAVVDANNWAT RASSSR+STLAVMQPGGRNRP+RDWKAIKREAE+K                    XXXX            LET SA+ LD++  T + +GIMLAKV V+ T G+YG KKVV+F KAF KARK+
Sbjct:    1 MRSTSYPRVPRALFCSALLLSQHAVVDANNWATGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEKRKNXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXLETVSAEALDMEEDTAEDIGIMLAKVVVIATAGVYGIKKVVAFAKAFTKARKD 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A1_ECTSI7.050e-4360.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:1404500..1407756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006760.1
Exons5
Model size1366
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15150.1prot_P-fluviatile_contig9.15150.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 1404500..1407281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817322.1616464-CDS-P-fluviatile_contig9:1404499..14046901622817322.1616464-CDS-P-fluviatile_contig9:1404499..1404690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1404500..1404690 +
1693572058.5882492-CDS-P-fluviatile_contig9:1404499..14046901693572058.5882492-CDS-P-fluviatile_contig9:1404499..1404690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1404500..1404690 +
1622817322.175973-CDS-P-fluviatile_contig9:1404928..14051361622817322.175973-CDS-P-fluviatile_contig9:1404928..1405136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1404929..1405136 +
1693572058.6042202-CDS-P-fluviatile_contig9:1404928..14051361693572058.6042202-CDS-P-fluviatile_contig9:1404928..1405136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1404929..1405136 +
1622817322.1858256-CDS-P-fluviatile_contig9:1405738..14059061622817322.1858256-CDS-P-fluviatile_contig9:1405738..1405906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1405739..1405906 +
1693572058.7514307-CDS-P-fluviatile_contig9:1405738..14059061693572058.7514307-CDS-P-fluviatile_contig9:1405738..1405906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1405739..1405906 +
1622817322.1958039-CDS-P-fluviatile_contig9:1406569..14066261622817322.1958039-CDS-P-fluviatile_contig9:1406569..1406626Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1406570..1406626 +
1693572058.760821-CDS-P-fluviatile_contig9:1406569..14066261693572058.760821-CDS-P-fluviatile_contig9:1406569..1406626Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1406570..1406626 +
1622817322.2065523-CDS-P-fluviatile_contig9:1407014..14072811622817322.2065523-CDS-P-fluviatile_contig9:1407014..1407281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1407015..1407281 +
1693572058.7697873-CDS-P-fluviatile_contig9:1407014..14072811693572058.7697873-CDS-P-fluviatile_contig9:1407014..1407281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 1407015..1407281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817322.2279327-UTR-P-fluviatile_contig9:1407281..14077561622817322.2279327-UTR-P-fluviatile_contig9:1407281..1407756Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 1407282..1407756 +
1693572058.7790835-UTR-P-fluviatile_contig9:1407281..14077561693572058.7790835-UTR-P-fluviatile_contig9:1407281..1407756Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 1407282..1407756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15150.1

>prot_P-fluviatile_contig9.15150.1 ID=prot_P-fluviatile_contig9.15150.1|Name=mRNA_P-fluviatile_contig9.15150.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=297bp
MRSTQYPRIPRAMLCSALLLSHHAVVDANNWATRRASSSRTSTLAVMQPG
GRNRPVRDWKAIKREAEDKLAKEAEEKAMEKKQQAGEAVEAVEEKLDEVH
EGVDKLETASADVLDLDAGTPQSLGIMLAKVAVVTTVGLYGAKKVVSFVK
AFMKARKEAANDVVAGESLAVAPANDDDNHDEGDEEVAEGGDEVNRSGDS
CVRKSVSRATDGFVTADEDEDISPVASAAATRDNESEAGKDTAQNDEERT
TNSLGESETSFAEANSRGNGDGDAEEAEERSVGRVSDGGKVDVSYI*
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mRNA from alignment at P-fluviatile_contig9:1404500..1407756+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15150.1 ID=mRNA_P-fluviatile_contig9.15150.1|Name=mRNA_P-fluviatile_contig9.15150.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3257bp|location=Sequence derived from alignment at P-fluviatile_contig9:1404500..1407756+ (Porterinema fluviatile SAG_2381)
ATGCGATCTACACAGTATCCACGCATACCTCGCGCAATGCTTTGCTCTGC
TCTTCTTTTGAGCCATCATGCCGTGGTAGATGCCAACAACTGGGCCACTA
GGCGAGCATCTTCATCTAGAACATCGACGCTGGCTGTCATGCAACCTGGC
GGGAGGAACAGACCCGTCCGCGACTGGAAGGCTATCAAGAGGTGCAATAC
AATTTGGATAGGCACGGCTTGTTCAAGAAGTTCCTTTAAGTGGGCATATG
ACGCAGTCGCATGCAAAGCCTCACAAGCTTATTGATTTCGGTGAACTAAA
TCCCGCCGCGTGGCTCATGTTCAGAAGTTTGGCGGAGGGCAGCGACCGGT
TTGGCTACCCATCCGCGAACCCCATGCTAGACCCTCTGCTGTATTCTGTT
TCATGTGCGTTCTTTTCGTTGATTATCAGGGAAGCCGAGGATAAGTTGGC
GAAAGAGGCAGAGGAAAAGGCCATGGAGAAAAAACAGCAGGCGGGAGAGG
CCGTTGAAGCTGTTGAAGAGAAGCTGGACGAGGTCCACGAGGGTGTGGAC
AAACTTGAGACGGCCTCGGCCGACGTGCTTGATCTCGACGCGGGTACGCC
CCAGTCTCTTGGCATCATGCTGGCGAAGGTTGCCGTGGTGAGGGATGCTC
GCCCATCTCTTTCAACTGCTCCAGGACCGGTGTCTTTCGACCGACCGCCC
TGTGCGTCTTAGACGGCAAGGATGTAACAGCGACCGCCTTCGAGAGAATC
CCACCTTGTTCGATACGATACGCACTGCAAGTTAACTGCTGCAGCTGCGA
TCCCTTCTACAGCAACCCTTGGATATATCTCGTGCAGGTGCTCCAGCCTC
TCGCGATCAGGGCATCTCTTTTGCCACCCCTACTTGCTTCAGATTATGCG
GACACACGCTCGACCGCTGCTGGTCGAACCTCCCTTGTAGCGTGGTCGAC
TTTCGGACGTTCGAAATACTCCACTCCGCGTTGTCGTCGTGCGTTCCGGC
ATCCCTTAATTGCGTTCGTCAAGTCGGTGATGTTTGCCTATCGAGCTTTT
GAAGCGCGAAAGCATAAACCGCACGGCCGCAACCTAGCGTAGATGGAAAG
GATCTGCGTGCGCGAACATAGTTCAGTTCATCGACGAAGGTACGTGCTGG
GCGTCTATCGCTCCGTTTGCCTCCATTTAGCCGGTTCTTCGTGCCAATGT
GCGTCGTGTATTCCGTGCTCCCTCCTCGTGCGGTGGAAGGTCACAACGGT
GGGATTGTACGGTGCGAAAAAGGTGGTTTCGTTCGTGAAGGCATTCATGA
AGGCTCGCAAAGAAGCAGCAAATGATGTGGTGGCGGGCGAGTCGTTGGCG
GTGGCGCCGGCAAACGACGACGACAACCACGACGAGGGCGATGAGGAGGT
GGCAGAGGTGGGCAGAATATTGGGTGCCTCCTGTTTTGTTTGTGGTTTGC
CCTCGCCAAGCCTGATATTGGGTTGGGTTTCGTATTCGGCTACGCGTGTA
GGGACGCCAACTTGGGTTGCTCGTGCCACGAGCCAGGCATCTCTGCGAGA
CATCATGGAATCGAAATCGCTCAAGCGAGTATATTTCTGGCCCCGACATG
ACTCAAAAGCTTCCAAACTGGGTTGCGGCTGTGGGTGAAAAATGAGTGCT
ACAAAAGTATTCAGAAACTGATCGTAAATCTGATATATTTTGCAGCTGTA
GTTTCACGCGTTTTGACCAGTGCAAAGGACTGCTTTGCTAAAATTCAGAG
GCCGCGAAATGTCCTTCGGCAAGAGAAAGCCGTTCGTGCTTGTGGAAGAC
CGAGGGCGGACTGTGTTCGGTATCGCTACGTGTGTTGCGACTGTCGTGTG
AACAGCATGTAAAGGCTCAGAAGTCACTGCCATAATTAAAGTCTCTTGTG
GATAGGGATAGTATGGTTTGAAAACGCTAGTGTGGTCGAACAGGAAATTG
AGGAAGAAGAACCAGGTCGTTTCTCGCCACGATCTCACTCGGCTTTTACC
TTTCTAAGGGCATTTTTCTTGTGGGCAGGTGATCGGTGAAGACGCGGAAG
AGGAAGATCCCGCTGAGAAGGGGGGCGATGAGGTGAATCGATCGGGTGAT
TCATGTGTGCGGAAGTCTGTTAGTCGGGTTGAAAAGTACCCGACCACCCA
CCAGCCTGACCTCGAACTCAGATTGTGCCAAGCCCGAAAACGTTCAAGTT
TCGTGTTTTTGGACAAGTTACCTGAGACAGGATGGCTTTGTGTGGATGTT
TTGGATGTTGATGCCGTTAAGCAGTAAGAATCCCGCTTTGGAGACATATT
TGCTGGCACTCCGTCGGTATGACGTGCGCCGCTCCGTATTATTCGCCGCC
AGCAGGCGCGTGTACAACTCTACCTGTCCTCAAGTTTTGTCAAGTTCGGG
GGGGCATTCTTGCCGGTCGCTTGTGGCCTTGCGTGGAAATCGCCCATCAA
ACTGTACGTCAACTTCGGTTTTACGCTACCCCCCTCGTGCATCCACTCAT
GTAAATATTAACCAGGCGACAGATGGCTTCGTGACAGCGGACGAAGATGA
GGACATATCGCCTGTGGCGTCAGCAGCGGCTACTCGAGACAACGAGAGCG
AGGCGGGTAAAGACACCGCACAAAATGACGAGGAGAGGACAACGAATAGC
CTCGGAGAGTCGGAGACATCTTTCGCAGAAGCTAACAGTAGAGGAAACGG
GGATGGGGATGCCGAAGAAGCAGAGGAGCGCTCGGTGGGGCGTGTCTCTG
ATGGCGGCAAGGTGGACGTTTCGTACATATAGGAGAATGTGCGCAGCCAG
TGTTGCATTTTTCGTTCGTCGACGCCCGGTGCCTGCAGATTCTGGGTTTC
GTTGCCTAATAGGGCGACAGGTGTGGTAGATATGATCCCGTTTGTTGGTC
CTGCTCGATTCGACGTTCAGTTTATGTCACTCATAGAGGAAGATTTTTAG
TTGCTGCAGAGGCGAAGGCCGCTTACTTGAATCGGGTGGCATAAATCATG
GTACCTTCGATAAGGTCGTGGCCACTACCTCCCGGAGTTCCTGGGGACAG
CTACACTCAGCAGTTCATCCGCGAAGAAAAGAACGGGTTGCAGTAGCCAT
TGTCTCGATGGCACCCCTCTCAGAAATCGTGACTTGGTTGATCGCTGTAT
TTGAGTTTCATTAGAATTGCGGAGTATCCATACCCGACGGCAGCTTATTG
GGCTTTCCAACCCATTTACGCCATTTTTTGCTTGGCAAATACCCTGCGAA
GCCTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:1404500..1407756+

>mRNA_P-fluviatile_contig9.15150.1 ID=mRNA_P-fluviatile_contig9.15150.1|Name=mRNA_P-fluviatile_contig9.15150.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1782bp|location=Sequence derived from alignment at P-fluviatile_contig9:1404500..1407756+ (Porterinema fluviatile SAG_2381)
ATGCGATCTACACAGTATCCACGCATACCTCGCGCAATGCTTTGCTCTGC
TCTTCTTTTGAGCCATCATGCCGTGGTAGATGCCAACAACTGGGCCACTA
GGCGAGCATCTTCATCTAGAACATCGACGCTGGCTGTCATGCAACCTGGC
GGGAGGAACAGACCCGTCCGCGACTGGAAGGCTATCAAGAGATGCGATCT
ACACAGTATCCACGCATACCTCGCGCAATGCTTTGCTCTGCTCTTCTTTT
GAGCCATCATGCCGTGGTAGATGCCAACAACTGGGCCACTAGGCGAGCAT
CTTCATCTAGAACATCGACGCTGGCTGTCATGCAACCTGGCGGGAGGAAC
AGACCCGTCCGCGACTGGAAGGCTATCAAGAGGGAAGCCGAGGATAAGTT
GGCGAAAGAGGCAGAGGAAAAGGCCATGGAGAAAAAACAGCAGGCGGGAG
AGGCCGTTGAAGCTGTTGAAGAGAAGCTGGACGAGGTCCACGAGGGTGTG
GACAAACTTGAGACGGCCTCGGCCGACGTGCTTGATCTCGACGCGGGTAC
GCCCCAGTCTCTTGGCATCATGCTGGCGAAGGTTGCCGTGGGAAGCCGAG
GATAAGTTGGCGAAAGAGGCAGAGGAAAAGGCCATGGAGAAAAAACAGCA
GGCGGGAGAGGCCGTTGAAGCTGTTGAAGAGAAGCTGGACGAGGTCCACG
AGGGTGTGGACAAACTTGAGACGGCCTCGGCCGACGTGCTTGATCTCGAC
GCGGGTACGCCCCAGTCTCTTGGCATCATGCTGGCGAAGGTTGCCGTGGT
CACAACGGTGGGATTGTACGGTGCGAAAAAGGTGGTTTCGTTCGTGAAGG
CATTCATGAAGGCTCGCAAAGAAGCAGCAAATGATGTGGTGGCGGGCGAG
TCGTTGGCGGTGGCGCCGGCAAACGACGACGACAACCACGACGAGGGCGA
TGAGGAGGTGGCAGAGGTCACAACGGTGGGATTGTACGGTGCGAAAAAGG
TGGTTTCGTTCGTGAAGGCATTCATGAAGGCTCGCAAAGAAGCAGCAAAT
GATGTGGTGGCGGGCGAGTCGTTGGCGGTGGCGCCGGCAAACGACGACGA
CAACCACGACGAGGGCGATGAGGAGGTGGCAGAGGGGGGCGATGAGGTGA
ATCGATCGGGTGATTCATGTGTGCGGAAGTCTGTTAGTCGGGGGGGCGAT
GAGGTGAATCGATCGGGTGATTCATGTGTGCGGAAGTCTGTTAGTCGGGC
GACAGATGGCTTCGTGACAGCGGACGAAGATGAGGACATATCGCCTGTGG
CGTCAGCAGCGGCTACTCGAGACAACGAGAGCGAGGCGGGTAAAGACACC
GCACAAAATGACGAGGAGAGGACAACGAATAGCCTCGGAGAGTCGGAGAC
ATCTTTCGCAGAAGCTAACAGTAGAGGAAACGGGGATGGGGATGCCGAAG
AAGCAGAGGAGCGCTCGGTGGGGCGTGTCTCTGATGGCGGCAAGGTGGAC
GTTTCGTACATATAGGCGACAGATGGCTTCGTGACAGCGGACGAAGATGA
GGACATATCGCCTGTGGCGTCAGCAGCGGCTACTCGAGACAACGAGAGCG
AGGCGGGTAAAGACACCGCACAAAATGACGAGGAGAGGACAACGAATAGC
CTCGGAGAGTCGGAGACATCTTTCGCAGAAGCTAACAGTAGAGGAAACGG
GGATGGGGATGCCGAAGAAGCAGAGGAGCGCTCGGTGGGGCGTGTCTCTG
ATGGCGGCAAGGTGGACGTTTCGTACATATAG
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