mRNA_P-fluviatile_contig9.15084.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15084.1
Unique NamemRNA_P-fluviatile_contig9.15084.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: D8LCB4_ECTSI (PIG-P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.620e-28
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 2
Query:  179 ISSLQNAALFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTIT 391
            I+SL   AL+LVWAYVPE  LQ LGITYYPSKYWAIAIPSAIFVTWS+AVLVYIAVNFMSTA LDSFDTIT
Sbjct:   25 IASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTIT 95          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A3M6VVN8_9STRA (PIG-P domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVN8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.650e-21
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  197 AALFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            +ALF VWAYVPER+L+  G TY+PSK+WA+A+P+ I VT+  ++++Y A+N +ST +L S+ TI D H  P+ + S+ +EDD          P IGDI +  VNR L+
Sbjct:   37 SALFYVWAYVPERSLEAYGFTYFPSKHWAVAVPAMIVVTYLFSLVLYKAMNLLSTPSLQSYATILDTHTVPLPEGSTCFEDD------TEATPGIGDISIFEVNRNLF 138          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A0W8DPP5_PHYNI (PIG-P domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DPP5_PHYNI)

HSP 1 Score: 98.2 bits (243), Expect = 6.280e-21
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  194 NAALFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
               LFLVWAYVPE  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN +ST  L S+ TI D H  P+ + ++ +EDD          P IGDI +  VNR L+
Sbjct:   15 GVVLFLVWAYVPEATLEAYGFTYFPSKHWAVAVPAMIVVTYLFSLVIYKAVNLLSTPELGSYATIVDTHTVPLPEGTTCFEDD------TKATPGIGDISIFEVNRHLF 117          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A7S2D162_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D162_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.420e-21
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVL----VYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRV---PNIGDIDMSTVNRVLY--QEPPRR 538
            +FL WAY+PE  L  LGITYYPSKYWAIA+P    + + MA++    +Y+AVN ++TA LDS +TITD HA+ V +  + W ++    +AA RV   P IGD+DM  VN++LY   E PRR
Sbjct:   29 IFLAWAYLPEANLHKLGITYYPSKYWAIALP----IWFCMAIMTTSFMYVAVNMLATAPLDSLETITDSHARKV-EVQNPWSEE----AAARRVGQVPAIGDLDMEVVNKLLYLRAELPRR 140          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A6A3KYW7_9STRA (PIG-P domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KYW7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.040e-21
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            LFLVWAYVPE  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN +ST AL S+ TI D H  P+ + +S +EDD          P IGDI +  VNR L+
Sbjct:   71 LFLVWAYVPEATLEAYGFTYFPSKHWAVAVPAMIVVTYLFSLVLYKAVNLLSTPALGSYATILDTHTVPLPEGTSCFEDD------TEATPGIGDISIFEVNRHLF 170          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: W2N136_PHYPR (PIG-P domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2N136_PHYPR)

HSP 1 Score: 97.8 bits (242), Expect = 3.650e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            LFLVWAYVPE  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN +ST  L S+ TI D H  P+ + ++ +EDD          P IGDI +  VNR L+
Sbjct:   72 LFLVWAYVPEATLEAYGFTYFPSKHWAVAVPAMIVVTYLFSLVIYKAVNLLSTPELGSYATIVDTHTVPLPEGTTCFEDD------TKATPGIGDISIFEVNRHLF 171          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: D0NQJ5_PHYIT (PIG-P domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQJ5_PHYIT)

HSP 1 Score: 95.9 bits (237), Expect = 5.330e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            LFLVWAYVPE  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN +ST  L S+ TI D H  P+ + ++ +EDD          P IGDI +  VNR L+
Sbjct:   26 LFLVWAYVPEATLEVYGFTYFPSKHWAVAVPAMIVVTYLFSLVMYKAVNLLSTPGLGSYATILDTHTVPLPEGTTCFEDD------TEATPGIGDISIFEVNRHLF 125          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A662YAH5_9STRA (PIG-P domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAH5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.110e-19
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 2
Query:   59 GLLAGSLVWWRTEKMVPAAPRVKQGALLFLIARAFRVVRCISSLQNAALFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            G LA +L +  +     + PR+     + ++ R+  VV          LFLVWAYVPE  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN MST +L S+ T+ D H  P+ +  S + DD       +  P IGDI +  VNR L+
Sbjct:   68 GWLASTLFYGGSRTRPWSNPRI----FINVLTRSLVVV-------TVVLFLVWAYVPETTLEAYGFTYFPSKHWAVAVPALIVVTYLFSLVLYKAVNLMSTPSLGSYTTVLDAHTVPLPEGRSCFVDD------TAATPGIGDISIFEVNRHLF 204          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: A0A225V843_9STRA (PIG-P domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225V843_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.550e-19
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            LFLVWAYVP+  L+  G TY+PSK+WA+A+P+ I VT+  ++++Y AVN +ST  L S+ TI D H  P+ + ++ ++DD          P IGDI +  VNR L+
Sbjct:   26 LFLVWAYVPDATLEAYGFTYFPSKHWAVAVPAMIVVTYLFSLVLYKAVNLLSTPGLGSYATIIDTHTVPLPEGTTCFQDD------TEATPGIGDISIFEVNRHLF 125          
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Match: G4ZTU9_PHYSP (PIG-P domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZTU9_PHYSP)

HSP 1 Score: 94.4 bits (233), Expect = 2.010e-19
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  203 LFLVWAYVPERALQGLGITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMHAKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLY 520
            LFLVWAYVPE  L+  G TY+PSK+WA+A+PS I VT+  ++++Y AVN +ST  L S+ TI D H   + + ++ +EDD          P IGDI +  VNR L+
Sbjct:   26 LFLVWAYVPEATLEAYGFTYFPSKHWAVAVPSMIVVTYLFSLVLYKAVNLLSTPGLGSYATILDTHTVLLPEGTACFEDD------TEATPGIGDISIFEVNRHLF 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB4_ECTSI1.620e-2885.92PIG-P domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A3M6VVN8_9STRA1.650e-2146.30PIG-P domain-containing protein n=1 Tax=Peronospor... [more]
A0A0W8DPP5_PHYNI6.280e-2144.95PIG-P domain-containing protein n=1 Tax=Phytophtho... [more]
A0A7S2D162_9STRA6.420e-2149.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6A3KYW7_9STRA8.040e-2148.11PIG-P domain-containing protein n=4 Tax=Phytophtho... [more]
W2N136_PHYPR3.650e-2046.23PIG-P domain-containing protein n=8 Tax=Phytophtho... [more]
D0NQJ5_PHYIT5.330e-2046.23PIG-P domain-containing protein n=2 Tax=Phytophtho... [more]
A0A662YAH5_9STRA1.110e-1937.66PIG-P domain-containing protein n=1 Tax=Nothophyto... [more]
A0A225V843_9STRA1.550e-1944.34PIG-P domain-containing protein n=3 Tax=Phytophtho... [more]
G4ZTU9_PHYSP2.010e-1946.23PIG-P domain-containing protein n=1 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:793180..796522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D8LCB4
Preferred nameGPI19
KEGG koko:K03861,ko:K10847,ko:K20178
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko01524,ko03420,ko04138,map00563,map01100,map01524,map03420,map04138
GOsGO:0000506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsKOG2257@1,KOG2257@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPIG-P
Ec32 orthologEc-14_005380.1
Exons5
Model size1397
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.7984374-UTR-P-fluviatile_contig9:793179..7938731622817313.7984374-UTR-P-fluviatile_contig9:793179..793873Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 793180..793873 -
1693572029.903604-UTR-P-fluviatile_contig9:793179..7938731693572029.903604-UTR-P-fluviatile_contig9:793179..793873Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 793180..793873 -
1622817313.8578334-UTR-P-fluviatile_contig9:796247..7962531622817313.8578334-UTR-P-fluviatile_contig9:796247..796253Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 796248..796253 -
1693572029.9570158-UTR-P-fluviatile_contig9:796247..7962531693572029.9570158-UTR-P-fluviatile_contig9:796247..796253Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 796248..796253 -
1622817313.8684442-UTR-P-fluviatile_contig9:796428..7965221622817313.8684442-UTR-P-fluviatile_contig9:796428..796522Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 796429..796522 -
1693572029.9686506-UTR-P-fluviatile_contig9:796428..7965221693572029.9686506-UTR-P-fluviatile_contig9:796428..796522Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 796429..796522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.8102064-CDS-P-fluviatile_contig9:793873..7940531622817313.8102064-CDS-P-fluviatile_contig9:793873..794053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 793874..794053 -
1693572029.9192002-CDS-P-fluviatile_contig9:793873..7940531693572029.9192002-CDS-P-fluviatile_contig9:793873..794053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 793874..794053 -
1622817313.8215117-CDS-P-fluviatile_contig9:794549..7946801622817313.8215117-CDS-P-fluviatile_contig9:794549..794680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 794550..794680 -
1693572029.9276266-CDS-P-fluviatile_contig9:794549..7946801693572029.9276266-CDS-P-fluviatile_contig9:794549..794680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 794550..794680 -
1622817313.8341434-CDS-P-fluviatile_contig9:795773..7958921622817313.8341434-CDS-P-fluviatile_contig9:795773..795892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 795774..795892 -
1693572029.9355283-CDS-P-fluviatile_contig9:795773..7958921693572029.9355283-CDS-P-fluviatile_contig9:795773..795892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 795774..795892 -
1622817313.8474514-CDS-P-fluviatile_contig9:796074..7962471622817313.8474514-CDS-P-fluviatile_contig9:796074..796247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 796075..796247 -
1693572029.9488614-CDS-P-fluviatile_contig9:796074..7962471693572029.9488614-CDS-P-fluviatile_contig9:796074..796247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 796075..796247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15084.1prot_P-fluviatile_contig9.15084.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 793874..796247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15084.1

>prot_P-fluviatile_contig9.15084.1 ID=prot_P-fluviatile_contig9.15084.1|Name=mRNA_P-fluviatile_contig9.15084.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=201bp
MVPAAPRVKQGALLFLIARAFRVVRCISSLQNAALFLVWAYVPERALQGL
GITYYPSKYWAIAIPSAIFVTWSMAVLVYIAVNFMSTAALDSFDTITDMH
AKPVIDRSSVWEDDGPPNSAASRVPNIGDIDMSTVNRVLYQEPPRRGPSR
IGTPRRRREWGSPVPEPSQTSSRGEHLRERWDPRDLQDGAGDELTGSGFQ
*
back to top

mRNA from alignment at P-fluviatile_contig9:793180..796522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15084.1 ID=mRNA_P-fluviatile_contig9.15084.1|Name=mRNA_P-fluviatile_contig9.15084.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3343bp|location=Sequence derived from alignment at P-fluviatile_contig9:793180..796522- (Porterinema fluviatile SAG_2381)
ATGGATTCTCTCCCTAGACGTCGAAAAGAAGGCGGGGGCGAAATTGTAGA AGTCTACGGGTTTGCTGGCTGGATCGCTAGTCTGGTGGCGTACGGTGAGA GACTTACAAGACTTATCTCAGAGACTCAGGAGGGCGAGAACAGGAAATGT TCGGGTTGCGCCGCGTTTTCTAGGTGCTCGGTCAAGGGCTCAAGGGCGAA GGGCAAAGCCTACTGTCCGCCATTGCACATTTCATAGCCGAGCGCCCGTC GTTTGCCGCAAATCCACAGGAAAAAATGGTTCCAGCAGCTCCGAGAGTCA AGCAAGGTGCGCTTTTGTTCCTCATCGCACGTGCGTTTCGCGTTGTTCGA TGCATTTCCTCGCTTCAAAACGCAGCCCTTTTCCTGGTGTGGGCGTACGT GCCGGAAAGAGCGCTCCAAGGCCTCGGCATCACGTACTACCCCAGCAAGT GAGAAGGCATCTTCTTTGCACGGTCGATTTCTACGTAGCTTTCGCCACCG TCCTAAGGTAGCTTTTGAAGTATGACGGATTTGACCCTGTGCAATGCCTC CGGTGCTGCCTACTGCTAACCATCACTGCGCGCTCTGCCGTGTCGCCTCT ACCCTGGGACCCGGCGTGCATCTCGCGTAGGTACTGGGCGATTGCCATCC CGAGCGCCATTTTTGTCACGTGGTCAATGGCCGTTTTGGTCTACATCGCG GTAAATTTCATGAGCACCGCCGCGCTCGATTCTTTCGACACCATCACAGG TACGCTTGCGCAGAGTAGGGTGTACCGTAAAGACCAGGGCGAACGCCCGC CGGGGTAATCGTGTGTACAGTCGGAAAGAGACGCCCTGGGGGCGTTCACA ACGCACCCAGGGCGTGTGCTCCATACCCTGCCGATTTGTCTGGATGAAAA AAGTTCTGGCGCCCCCCGAGACGATTGAAAAAACGCCTGGCAGCGGACAC ACCCACCCTGCCCTGCCCTGCCCACAGAGCTGTCATGTCGCAGACCACCA GGCTTGGTATTGTTCTTCACCACAATGTCCTCTTCTTTTGTCAATATATT TCCGTTGAAACCTTCTGCATTGTCGACGCTGTTATGTCTTCATTGGTTCA TGGCATTCTTGCCTTCGTATGTCACTGCATGGATTTGTTCGTTTGATATT TTCCTTGAGTGCCAAGAGTCGGTAGGGTTGTTTTTCGGAGAGAGAAAAAG ACAACCGGCAGCTTCTTAGGAGAACAAAGCTAACAAGCTACGGAGTTAGG ATACCTGCGCCTTGTCGGCCACTATCACGTGCTGAGCATGTGGCAGTTGC TTGCTTCGGCAGAAACACAGAGCTCACACCATAGGTTTCTTTCCGCCCCG GGGGGCGTTTGCATGCAAAACTCGAAAGAAGAAAGCCCCGGGGCGTTGGC TACGTACCCGGGGCGCTTCTGACAAACAAGATGCGGAAATGGCGCCTCGG GGCGTTCGCTCCGCATTGTTGCAGTTTTTTCGATTGTTTAGTGCCCCGGG GCCCTTCGTAAGAGGGGGGGCTGCGTTCGCTGCGGTCCTTACGGTAGTTC ACGGCGAGGAGTAGAGTTCTTGACATTTTGGCACCATTGTAAATATCGGC CAGAGCACCCTTTTGATGCTCAGCTCCATCGCTAGCGCGTCGTTGTGTCA TCGGTAGTGAAATCGCTATAGGGAGAGATAGAAAGAGTTACAGATCTGCT CGTTATCCAAGGGTCTCTGATCTCCTCTCCACCAAGACCCCAGGAAATTT GGAAAATGGAAGAGCCTCCACTGTCCGCGTCATGGCGTGTGCACGCGTCC ACACACGCAGTACAACTGAACTCTCCTCTACCGTTTTGACAGATATGCAT GCCAAGCCGGTGATCGATCGGTCCTCAGTCTGGGAAGACGACGGGCCGCC AAACAGCGCCGCCAGCCGCGTGCCAAATATCGGTGACATCGACATGTCCA CGGTGAACAGGGTGCTGTACCAGGTACAGCGCTCCCCCGACTTATGTTTC GTGTGCGCTTTCTGCTTCAAAACGGCGTAGCCAGTAGCCGGTGGGGCACC GCCCTAGGGATGCGAAACCCTCGTGTCGTACGTCACGAACACTCTCCTGC GGGGGGCCACCTTGTTTCGATCTCCGCATCACGTTTCGTCGCTTGGTTCA AGAGCCATTGTAAGCTCATATTTCTCGAACCTAGTGTTTTTTTCGTGACG CATGTCGGTGGTATGTTGAACCAGCCCCGCTCAGAGAGGGTCGCCCTTAA GGGATGCGGAACTGGTGAAACGGAATCTGAGTTTGGAGAATTGTCGGCAT ATTTTCCTGCTGTCTCCACGTGGACAACACGAGATCCCGCAAGTCGCATA TGGCACCCAGTTTACACGTGGTGCGCTCGTTGACACGGGTTCCGTACAGA AATCAAGGGTTAGCTTTGCATCCATCCGTGCCCCGTTTCTTCCACGTCTG CTCACGTTTCTCTCCTCAGGAGCCTCCAAGAAGGGGACCTTCAAGGATCG GTACCCCTCGGCGAAGAAGAGAATGGGGCAGCCCTGTGCCGGAGCCATCA CAAACATCCAGTCGGGGCGAGCATCTGCGGGAGCGATGGGATCCACGAGA TCTGCAAGATGGTGCGGGGGATGAGCTCACCGGCAGCGGTTTTCAGTAGC CGCTGAAGTCCCCTCCTGACCTGTTCCGTGCAAGCATGTTGTATGCTACG AAGTGCCGTATCTTTTGGGCTCTTGCCATTTTCGCCTTGGCATCCTTTTC ATAGCTGAATCAGCATCAGCTGAAGGAGCAGAAAATTGGCAGTTGGAGAT TTTATTTCACTCCAAACATCCTTTTTTGTGAGCGTCTTGTGCCGACTTTG ACGTGTGTTAATAGACTTGAGTAGTAGATGCAACGATCTTTCCTGTAGCC CGAATCCCAGTGCCAACAGTGCACGTCCACTCTCGGGACTCCCAGACGTG TTGACAAGTTTCCGTGGAAAATGCGATGCACAGAATGATGATCGGACTGG CAGCGCTAGTGAACGTGACGGGCTAGTTGTTGAACAGTTGATGTCCCACC CTGGTCCTTCGGATACCACCTTTATGGGCTCGTGTGGCCTCTGACTGTGC CTGTCCGTCGAGAGAGCGCATGCATTCATGAGAACACAGGGGGCGTCGCA TGTGGTCTACGGCCAGGTGTATCTGGATGCATTCCGTCGCCATAAAAGTG CCGTGAGATGGCACAGTTCACTTGCTTCTATAGTATATTCTTCGGCATGA CCTGCAACCTGCGGGCACACACGTCATCCACGGATCATGGATCACCGACA GCTGCAGCATGTGCGCTATTTTGTCCCTGAAACATGACGCCCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:793180..796522-

>mRNA_P-fluviatile_contig9.15084.1 ID=mRNA_P-fluviatile_contig9.15084.1|Name=mRNA_P-fluviatile_contig9.15084.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1206bp|location=Sequence derived from alignment at P-fluviatile_contig9:793180..796522- (Porterinema fluviatile SAG_2381)
ATGGTTCCAGCAGCTCCGAGAGTCAAGCAAGGTGCGCTTTTGTTCCTCAT
CGCACGTGCGTTTCGCGTTGTTCGATGCATTTCCTCGCTTCAAAACGCAG
CCCTTTTCCTGGTGTGGGCGTACGTGCCGGAAAGAGCGCTCCAAGGCCTC
GGCATCACGTACTACCCCAGCAAATGGTTCCAGCAGCTCCGAGAGTCAAG
CAAGGTGCGCTTTTGTTCCTCATCGCACGTGCGTTTCGCGTTGTTCGATG
CATTTCCTCGCTTCAAAACGCAGCCCTTTTCCTGGTGTGGGCGTACGTGC
CGGAAAGAGCGCTCCAAGGCCTCGGCATCACGTACTACCCCAGCAAGTAC
TGGGCGATTGCCATCCCGAGCGCCATTTTTGTCACGTGGTCAATGGCCGT
TTTGGTCTACATCGCGGTAAATTTCATGAGCACCGCCGCGCTCGATTCTT
TCGACACCATCACAGGTACTGGGCGATTGCCATCCCGAGCGCCATTTTTG
TCACGTGGTCAATGGCCGTTTTGGTCTACATCGCGGTAAATTTCATGAGC
ACCGCCGCGCTCGATTCTTTCGACACCATCACAGATATGCATGCCAAGCC
GGTGATCGATCGGTCCTCAGTCTGGGAAGACGACGGGCCGCCAAACAGCG
CCGCCAGCCGCGTGCCAAATATCGGTGACATCGACATGTCCACGGTGAAC
AGGGTGCTGTACCAGATATGCATGCCAAGCCGGTGATCGATCGGTCCTCA
GTCTGGGAAGACGACGGGCCGCCAAACAGCGCCGCCAGCCGCGTGCCAAA
TATCGGTGACATCGACATGTCCACGGTGAACAGGGTGCTGTACCAGGAGC
CTCCAAGAAGGGGACCTTCAAGGATCGGTACCCCTCGGCGAAGAAGAGAA
TGGGGCAGCCCTGTGCCGGAGCCATCACAAACATCCAGTCGGGGCGAGCA
TCTGCGGGAGCGATGGGATCCACGAGATCTGCAAGATGGTGCGGGGGATG
AGCTCACCGGCAGCGGTTTTCAGTAGGAGCCTCCAAGAAGGGGACCTTCA
AGGATCGGTACCCCTCGGCGAAGAAGAGAATGGGGCAGCCCTGTGCCGGA
GCCATCACAAACATCCAGTCGGGGCGAGCATCTGCGGGAGCGATGGGATC
CACGAGATCTGCAAGATGGTGCGGGGGATGAGCTCACCGGCAGCGGTTTT
CAGTAG
back to top