mRNA_P-fluviatile_contig9.15081.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15081.1
Unique NamemRNA_P-fluviatile_contig9.15081.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig9.15081.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.240e-39
Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  100 QSIVSLMHTDIAKAHARANPHGRVISPVEIQNHLRSAVKRMNVRLIELRAGER-KIEYNTTVMSKLIHTQNKIITDELELKLGVNIESLLPFLDLAMELKKRSDAAYQAVKNRVDKAKRSEAEKAA 474
            +SI+S M T IA A+A+ANP G  ++P  + +HL++AVKRMNVRLIELR+G   KIEYNTT+MSKLI+TQNKIITDELE KLG+N+ SL P LDL  ELKKRSD AY AVKN+VD+AKRSEA KAA
Sbjct:   15 KSILSEMGTLIAAANAKANPGGVNVAPQRVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAA 140
[Close]
BLAST of mRNA_P-fluviatile_contig9.15081.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.090e-38
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:  118 MHTDIAKAHARANPHGRVISPVEIQNHLRSAVKRMNVRLIELRAGER-KIEYNTTVMSKLIHTQNKIITDELELKLGVNIESLLPFLDLAMELKKRSDAAYQAVKNRVDKAKRSEAEKAAKAA 483
            M T IA A+A+ANP G  ++P ++ +HL++AVKRMNVRLIELR+G   KIEYNTT+MSKLI TQNKIITDELE KLG+N+ SL P LDL  ELKKRSD AY AVKN+VD+AKRSEA KAA  A
Sbjct:    1 MGTLIAAANAKANPGGVNVAPQKVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLITTQNKIITDELEQKLGMNLASLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAAMKA 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTJ7_9PHAE2.240e-3969.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB6_ECTSI4.090e-3869.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:758471..761335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size568
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15081.1prot_P-fluviatile_contig9.15081.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 758472..761335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.5802577-CDS-P-fluviatile_contig9:758471..7588221622817313.5802577-CDS-P-fluviatile_contig9:758471..758822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 758472..758822 -
1693572027.807347-CDS-P-fluviatile_contig9:758471..7588221693572027.807347-CDS-P-fluviatile_contig9:758471..758822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 758472..758822 -
1622817313.592969-CDS-P-fluviatile_contig9:759899..7600571622817313.592969-CDS-P-fluviatile_contig9:759899..760057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 759900..760057 -
1693572028.1016788-CDS-P-fluviatile_contig9:759899..7600571693572028.1016788-CDS-P-fluviatile_contig9:759899..760057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 759900..760057 -
1622817313.6074407-CDS-P-fluviatile_contig9:761277..7613351622817313.6074407-CDS-P-fluviatile_contig9:761277..761335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 761278..761335 -
1693572028.1216292-CDS-P-fluviatile_contig9:761277..7613351693572028.1216292-CDS-P-fluviatile_contig9:761277..761335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 761278..761335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15081.1

>prot_P-fluviatile_contig9.15081.1 ID=prot_P-fluviatile_contig9.15081.1|Name=mRNA_P-fluviatile_contig9.15081.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=189bp
ASASAAARRPKKNETPAQTAVWNCVYYNVHMYQQSIVSLMHTDIAKAHAR
ANPHGRVISPVEIQNHLRSAVKRMNVRLIELRAGERKIEYNTTVMSKLIH
TQNKIITDELELKLGVNIESLLPFLDLAMELKKRSDAAYQAVKNRVDKAK
RSEAEKAAKAAGNGAGVGGGGEGGPRGSSISSSSDNNNN
back to top

mRNA from alignment at P-fluviatile_contig9:758471..761335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15081.1 ID=mRNA_P-fluviatile_contig9.15081.1|Name=mRNA_P-fluviatile_contig9.15081.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2865bp|location=Sequence derived from alignment at P-fluviatile_contig9:758471..761335- (Porterinema fluviatile SAG_2381)
GCTTCCGCCAGTGCTGCTGCTCGAAGGCCGAAGAAAAATGAGACACCGGC
GCAGACAGGTGAGCCCCGTAACATGGTTGTGATGAGCAAGCCGCAGGTGG
TTTTCGGCTTTCGTGGTTTCGGCGAAACTCGCGTTGTCATAATCATGCCG
CAGCGACAACTCTTAATATCGTGATATGCATATTCGAAGTGTCATCAGCA
GGTGTGAGGCGTCGCTCTTGCCCTCCTGTGTTTGCTGGAAGCTCGAACGA
TTGGCAACCACGCCATTGAATATGCGCTCAACTCTAGCAGGAATCAATAA
GACGAGATCAAACCCTCGAAACACTCAAATTGTCGTGGAGCTCATACACA
AAAGCATTATGCCCATGACGAGGCACATTTGCGGAGCAAAACGAGCGAAC
TTCTCCTGATCTTTTGCTATACAAATCATTCGGTGAGGTTCCTTCCATGG
AGTGCCTTGTTACCAAAAGCGGGATGCCCCAATACTTCAACCCAGTCGCA
GTGTATTCAACATTGAGTCCAATGCAAGCACACGGTTTCGGCGAAGAATA
CTGAAACTTCGTCGAAGGGACGTAAGATTAAACGCCGAAATGTTGCTCCT
GTTGCTGCACGCACGTTGCTTGAGCTTAAGTTGACTCCCGGCGCAGGTTT
CGTTTTCAAACAGCGCAGGCTTTTGGGGGGGGACTTGTGGCGTTTTATAT
GTCTGCGGGATTACTAACATTTTACAAAGTAAGGGGGTACGCACGGCGAG
GCGTCGGCGAGACCTGAGGGGAGGAGGGAAAGTTGGTAGACGCACGCACG
AAGGGATTATGATACTACGGGATAACGACACAGACCTGAGAGGCCTACCC
ACCAATGCCGCCTTTAAATTTCCGCCGATTGGGTTTCAGTCTTCCGTGTC
GTTCATCGCGGCGTCCCTTCCTTCTCCTTCCTCGCTCTCTGGTTTGCCTC
TGCTCCGTCCGTCGTGTCGGTGCTCCGCATGCGTGCGTGCATTCATCTAC
TCCTGCTCTTCTGCTTGGGAACTTTGGGCATGAACAACATGCATCCATCT
GCTACTGCTACTGCTTCTGCGCGGGAACTTCGGACGTTATCAATACCCTG
TGCTGAACGCGCCTCCGATTGGCTGCGCGCGCACGCCCACGGAACACACA
CCAACTGGATGAACCGCCGAACAAAACGATCGACCTGCCGTGGACGGATG
GATGGATGGATCGAACGCACCTTCCTATCTCGTCGACGCTCGTGCGACGC
GGGGCGCGACCGACGGACGACCAAGCAGCCGTCTGGAACTGCGTATACTA
CAACGTGCACATGTATCAGCAGAGCATTGTCAGCCTGATGCACACCGACA
TCGCCAAGGCGCACGCCCGGGCCAACCCCCACGGACGCGTCATCAGCCCC
GTGGAGATACAGAACCATCTCAGGAGTGCCGTCAAGGTTAGGCTGCTTCC
CTTCCTGTGTGGGTTAGGCTGCTCAAGTGTTAGACGTCAAGCGTGCTGCC
CAGCGACCAGTTAGTTGGCGACGTTGTTTTCAGCGGGGCGCAATACGAAA
AGCATTTCTTATCGGTTAGTGGGTCGGTGTTTTCAATTCAAGGAAAGGCA
GAACTCTTTTCCTGGCCAATCGAGGTCGTCAATACGAGTGGGGTGATCTA
AAAACACGAGGCTTTTGTCCCCTGGGTCCCTGAAAGGAAGTTAGGGTGTT
CATTTTTGTACACGAATGAACCGACTTTGATTTTGCTGAACGCGAGGGGC
TTGTCAAGGCGCAGCTCAAAATTCCAAATTTTCTTGCGTAAAATACCCTC
ATGATTCTGTATTGGAGGCAGTCGGCATAGTGCAAGATAGCCCAATCCTC
TAGGTTCCGCCGATCGATTTTTGAGAAGAGTTCAATCGAAGTTCAAGCGG
CGGGCTTTTGGATCATCGAACCGCATAAGTCTTCGTGGCCCGCTTCGAAT
TTTTCGCTATACTCTGTCCCGCGTCCATATTGAAGTATCGTCCTACGGTC
AAAGGGAGGGAAGTTGCACATGCTTGCGCCTGTTCTGTCGCGCTTGACAT
GCACATTTTCATGTTCCGACAGCATTTGGTGTGATTTGACAGCCGCTGGA
GCAAGTAGTTGTGACGAATGGGAGCATCTGGCGTGATTTCACGGCCGTTG
TAGCACACGTAAATGTGACGAAGATAAGCCATGCTTCAGATAGGACAAGG
AAGAGGAGGTTATTCAGGTCGAGAACGAAGTTGATGCGTTGCAAGCGGAC
GAGGACCAGCGAGTATTGACCACAAGGCGAGAATGTAGCCCCCACTCCCA
TCACGGACGGCGATGTATCATCTACTGGGGTTATAGGAATGCAGCACTTG
CGTCTCGCGCAGAGAGAAGTCACTACCAAGCCATCCAACTATTTTGCGCA
AGCACAGCAAATGGACACCAAATGGAATGCACAAACCCGAACGCTTACCA
AGTCACGTACCCCACCCGATCGCACCACACACTATCCGACGCCGCTTCCG
TCCACACGTACAGCGGATGAACGTGAGGCTGATCGAGCTGCGCGCGGGGG
AACGCAAGATCGAGTATAACACGACGGTCATGTCCAAGCTAATCCACACG
CAAAACAAGATCATCACAGATGAGCTGGAGCTCAAGCTCGGTGTGAATAT
CGAGAGCTTGCTGCCCTTTCTGGACCTCGCCATGGAACTGAAGAAGAGGT
CGGACGCGGCCTACCAAGCCGTGAAGAACAGGGTCGACAAAGCCAAGAGG
AGCGAGGCTGAGAAGGCAGCGAAAGCGGCGGGCAATGGTGCTGGAGTGGG
AGGGGGGGGAGAGGGAGGACCACGAGGAAGCAGCATCAGCAGTAGCAGCG
ACAACAACAACAACA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:758471..761335-

>mRNA_P-fluviatile_contig9.15081.1 ID=mRNA_P-fluviatile_contig9.15081.1|Name=mRNA_P-fluviatile_contig9.15081.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1134bp|location=Sequence derived from alignment at P-fluviatile_contig9:758471..761335- (Porterinema fluviatile SAG_2381)
GCTTCCGCCAGTGCTGCTGCTCGAAGGCCGAAGAAAAATGAGACACCGGC
GCAGACAGGCTTCCGCCAGTGCTGCTGCTCGAAGGCCGAAGAAAAATGAG
ACACCGGCGCAGACAGCCGTCTGGAACTGCGTATACTACAACGTGCACAT
GTATCAGCAGAGCATTGTCAGCCTGATGCACACCGACATCGCCAAGGCGC
ACGCCCGGGCCAACCCCCACGGACGCGTCATCAGCCCCGTGGAGATACAG
AACCATCTCAGGAGTGCCGTCAAGCCGTCTGGAACTGCGTATACTACAAC
GTGCACATGTATCAGCAGAGCATTGTCAGCCTGATGCACACCGACATCGC
CAAGGCGCACGCCCGGGCCAACCCCCACGGACGCGTCATCAGCCCCGTGG
AGATACAGAACCATCTCAGGAGTGCCGTCAAGCGGATGAACGTGAGGCTG
ATCGAGCTGCGCGCGGGGGAACGCAAGATCGAGTATAACACGACGGTCAT
GTCCAAGCTAATCCACACGCAAAACAAGATCATCACAGATGAGCTGGAGC
TCAAGCTCGGTGTGAATATCGAGAGCTTGCTGCCCTTTCTGGACCTCGCC
ATGGAACTGAAGAAGAGGTCGGACGCGGCCTACCAAGCCGTGAAGAACAG
GGTCGACAAAGCCAAGAGGAGCGAGGCTGAGAAGGCAGCGAAAGCGGCGG
GCAATGGTGCTGGAGTGGGAGGGGGGGGAGAGGGAGGACCACGAGGAAGC
AGCATCAGCAGTAGCAGCGACAACAACAACAACCGGATGAACGTGAGGCT
GATCGAGCTGCGCGCGGGGGAACGCAAGATCGAGTATAACACGACGGTCA
TGTCCAAGCTAATCCACACGCAAAACAAGATCATCACAGATGAGCTGGAG
CTCAAGCTCGGTGTGAATATCGAGAGCTTGCTGCCCTTTCTGGACCTCGC
CATGGAACTGAAGAAGAGGTCGGACGCGGCCTACCAAGCCGTGAAGAACA
GGGTCGACAAAGCCAAGAGGAGCGAGGCTGAGAAGGCAGCGAAAGCGGCG
GGCAATGGTGCTGGAGTGGGAGGGGGGGGAGAGGGAGGACCACGAGGAAG
CAGCATCAGCAGTAGCAGCGACAACAACAACAAC
back to top